Experiment: D-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_724 and HP15_725 overlap by 4 nucleotides HP15_725 and HP15_726 overlap by 1 nucleotides HP15_726 and HP15_727 are separated by 25 nucleotides
HP15_724: HP15_724 - periplasmic sensor signal transduction histidine kinase, at 733,717 to 735,531
_724
HP15_725: HP15_725 - two component, sigma54 specific, transcriptional regulator, Fis family, at 735,528 to 736,880
_725
HP15_726: HP15_726 - hypothetical protein, at 736,880 to 737,008
_726
HP15_727: HP15_727 - methyl-accepting chemotaxis sensory transducer, at 737,034 to 738,728
_727
Position (kb) 735
736
737 Strain fitness (log2 ratio) -2
-1
0
1
2 at 734.563 kb on + strand, within HP15_724 at 734.579 kb on + strand, within HP15_724 at 734.647 kb on + strand, within HP15_724 at 734.657 kb on + strand, within HP15_724 at 734.657 kb on + strand, within HP15_724 at 734.657 kb on + strand, within HP15_724 at 734.695 kb on - strand, within HP15_724 at 734.754 kb on - strand, within HP15_724 at 734.975 kb on + strand, within HP15_724 at 735.081 kb on - strand, within HP15_724 at 735.169 kb on - strand, within HP15_724 at 735.210 kb on + strand, within HP15_724 at 735.218 kb on - strand, within HP15_724 at 735.404 kb on + strand at 735.412 kb on - strand at 735.470 kb on + strand at 735.480 kb on + strand at 735.511 kb on - strand at 735.584 kb on + strand at 735.757 kb on - strand, within HP15_725 at 735.757 kb on - strand, within HP15_725 at 735.787 kb on - strand, within HP15_725 at 736.103 kb on - strand, within HP15_725 at 736.256 kb on + strand, within HP15_725 at 736.282 kb on - strand, within HP15_725 at 736.283 kb on - strand, within HP15_725 at 736.490 kb on + strand, within HP15_725 at 736.560 kb on - strand, within HP15_725 at 736.620 kb on + strand, within HP15_725 at 736.628 kb on - strand, within HP15_725 at 736.673 kb on + strand, within HP15_725 at 737.113 kb on + strand at 737.113 kb on + strand at 737.119 kb on + strand at 737.127 kb on - strand at 737.269 kb on + strand, within HP15_727 at 737.277 kb on - strand, within HP15_727 at 737.277 kb on - strand, within HP15_727 at 737.277 kb on - strand, within HP15_727 at 737.373 kb on - strand, within HP15_727 at 737.375 kb on + strand, within HP15_727 at 737.383 kb on + strand, within HP15_727 at 737.391 kb on - strand, within HP15_727 at 737.391 kb on - strand, within HP15_727 at 737.457 kb on - strand, within HP15_727 at 737.459 kb on + strand, within HP15_727 at 737.467 kb on - strand, within HP15_727 at 737.467 kb on - strand, within HP15_727 at 737.467 kb on - strand, within HP15_727 at 737.467 kb on - strand, within HP15_727 at 737.472 kb on - strand, within HP15_727 at 737.500 kb on - strand, within HP15_727 at 737.601 kb on - strand, within HP15_727 at 737.661 kb on + strand, within HP15_727 at 737.766 kb on + strand, within HP15_727 at 737.837 kb on - strand, within HP15_727
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine as (N) remove 734,563 + HP15_724 0.47 -0.9 734,579 + HP15_724 0.47 +0.6 734,647 + HP15_724 0.51 -2.6 734,657 + HP15_724 0.52 -1.3 734,657 + HP15_724 0.52 -1.5 734,657 + HP15_724 0.52 -1.4 734,695 - HP15_724 0.54 +0.5 734,754 - HP15_724 0.57 -0.9 734,975 + HP15_724 0.69 -1.5 735,081 - HP15_724 0.75 -1.1 735,169 - HP15_724 0.80 +0.8 735,210 + HP15_724 0.82 +0.2 735,218 - HP15_724 0.83 -0.4 735,404 + -1.3 735,412 - -0.6 735,470 + -0.3 735,480 + -1.6 735,511 - -1.3 735,584 + -1.4 735,757 - HP15_725 0.17 -2.6 735,757 - HP15_725 0.17 -1.8 735,787 - HP15_725 0.19 +0.3 736,103 - HP15_725 0.42 +0.4 736,256 + HP15_725 0.54 -0.8 736,282 - HP15_725 0.56 -1.7 736,283 - HP15_725 0.56 -0.4 736,490 + HP15_725 0.71 +0.9 736,560 - HP15_725 0.76 -2.1 736,620 + HP15_725 0.81 -1.5 736,628 - HP15_725 0.81 -1.3 736,673 + HP15_725 0.85 -1.8 737,113 + -1.1 737,113 + -1.4 737,119 + -0.2 737,127 - -0.9 737,269 + HP15_727 0.14 +0.0 737,277 - HP15_727 0.14 +1.2 737,277 - HP15_727 0.14 -1.5 737,277 - HP15_727 0.14 +1.4 737,373 - HP15_727 0.20 +1.2 737,375 + HP15_727 0.20 -1.9 737,383 + HP15_727 0.21 +1.6 737,391 - HP15_727 0.21 -0.5 737,391 - HP15_727 0.21 -0.4 737,457 - HP15_727 0.25 +1.4 737,459 + HP15_727 0.25 +1.6 737,467 - HP15_727 0.26 -0.7 737,467 - HP15_727 0.26 -1.1 737,467 - HP15_727 0.26 -0.8 737,467 - HP15_727 0.26 -1.1 737,472 - HP15_727 0.26 +2.0 737,500 - HP15_727 0.27 -2.0 737,601 - HP15_727 0.33 -0.7 737,661 + HP15_727 0.37 -0.3 737,766 + HP15_727 0.43 +1.5 737,837 - HP15_727 0.47 +1.7
Or see this region's nucleotide sequence