Experiment: D-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_685 and HP15_686 are separated by 35 nucleotides HP15_686 and HP15_687 are separated by 23 nucleotides
HP15_685: HP15_685 - phage repressor, at 701,983 to 702,966
_685
HP15_686: HP15_686 - conserved hypothetical protein, at 703,002 to 703,913
_686
HP15_687: HP15_687 - protein containing domain of unknown function DUF1994, at 703,937 to 704,788
_687
Position (kb) 701
702
703 Strain fitness (log2 ratio) -1
0
1
2 at 700.995 kb on + strand at 700.997 kb on + strand at 701.005 kb on + strand at 701.233 kb on + strand at 701.271 kb on + strand at 701.307 kb on + strand at 701.307 kb on + strand at 701.307 kb on + strand at 701.335 kb on + strand at 701.345 kb on + strand at 701.359 kb on + strand at 701.404 kb on + strand at 701.455 kb on + strand at 701.513 kb on + strand at 701.542 kb on + strand at 701.662 kb on + strand at 701.667 kb on + strand at 701.784 kb on + strand at 701.796 kb on + strand at 701.854 kb on + strand at 702.986 kb on + strand at 703.046 kb on - strand at 703.046 kb on - strand at 703.107 kb on + strand, within HP15_686 at 703.147 kb on - strand, within HP15_686 at 703.147 kb on - strand, within HP15_686 at 703.279 kb on - strand, within HP15_686 at 703.286 kb on + strand, within HP15_686 at 703.294 kb on - strand, within HP15_686 at 703.340 kb on - strand, within HP15_686 at 703.344 kb on + strand, within HP15_686 at 703.549 kb on + strand, within HP15_686 at 703.551 kb on - strand, within HP15_686 at 703.735 kb on + strand, within HP15_686 at 703.735 kb on + strand, within HP15_686 at 703.735 kb on + strand, within HP15_686 at 703.735 kb on + strand, within HP15_686 at 703.743 kb on - strand, within HP15_686
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine as (N) remove 700,995 + -0.1 700,997 + +1.6 701,005 + -1.3 701,233 + -1.7 701,271 + -0.6 701,307 + +1.7 701,307 + +2.1 701,307 + -0.6 701,335 + +0.4 701,345 + +0.0 701,359 + +0.9 701,404 + +0.0 701,455 + +1.7 701,513 + -0.4 701,542 + +1.2 701,662 + +2.4 701,667 + +1.9 701,784 + +0.3 701,796 + +1.2 701,854 + +1.5 702,986 + +2.0 703,046 - -1.0 703,046 - -0.0 703,107 + HP15_686 0.12 -0.6 703,147 - HP15_686 0.16 -0.1 703,147 - HP15_686 0.16 +1.4 703,279 - HP15_686 0.30 +1.1 703,286 + HP15_686 0.31 +0.2 703,294 - HP15_686 0.32 +1.6 703,340 - HP15_686 0.37 -0.7 703,344 + HP15_686 0.38 +2.2 703,549 + HP15_686 0.60 +0.0 703,551 - HP15_686 0.60 +1.2 703,735 + HP15_686 0.80 +2.0 703,735 + HP15_686 0.80 +2.1 703,735 + HP15_686 0.80 -0.6 703,735 + HP15_686 0.80 +0.2 703,743 - HP15_686 0.81 +1.5
Or see this region's nucleotide sequence