Experiment: D-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_683 and HP15_684 are separated by 23 nucleotides HP15_684 and HP15_tRNA13 are separated by 290 nucleotides
HP15_683: HP15_683 - conserved hypothetical protein, at 699,403 to 700,191
_683
HP15_684: HP15_684 - hypothetical protein, at 700,215 to 700,508
_684
HP15_tRNA13: HP15_tRNA13 - tRNA-Met, at 700,799 to 700,874
_tRNA13
Position (kb) 700
701 Strain fitness (log2 ratio) -2
-1
0
1
2 at 699.827 kb on + strand, within HP15_683 at 699.875 kb on - strand, within HP15_683 at 699.878 kb on + strand, within HP15_683 at 699.921 kb on - strand, within HP15_683 at 700.116 kb on + strand at 700.121 kb on + strand at 700.174 kb on + strand at 700.227 kb on + strand at 700.290 kb on + strand, within HP15_684 at 700.354 kb on + strand, within HP15_684 at 700.424 kb on + strand, within HP15_684 at 700.529 kb on + strand at 700.690 kb on + strand at 700.690 kb on + strand at 700.690 kb on + strand at 700.949 kb on + strand at 700.995 kb on + strand at 700.997 kb on + strand at 701.005 kb on + strand at 701.233 kb on + strand at 701.271 kb on + strand at 701.307 kb on + strand at 701.307 kb on + strand at 701.307 kb on + strand at 701.335 kb on + strand at 701.345 kb on + strand at 701.359 kb on + strand at 701.404 kb on + strand at 701.455 kb on + strand at 701.513 kb on + strand at 701.542 kb on + strand at 701.662 kb on + strand at 701.667 kb on + strand at 701.784 kb on + strand at 701.796 kb on + strand at 701.854 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine as (N) remove 699,827 + HP15_683 0.54 +0.0 699,875 - HP15_683 0.60 +0.1 699,878 + HP15_683 0.60 +1.1 699,921 - HP15_683 0.66 +2.2 700,116 + +0.2 700,121 + -1.1 700,174 + +1.0 700,227 + +2.3 700,290 + HP15_684 0.26 -0.2 700,354 + HP15_684 0.47 -0.6 700,424 + HP15_684 0.71 -2.5 700,529 + -1.0 700,690 + +0.5 700,690 + +1.7 700,690 + -0.4 700,949 + -0.6 700,995 + -0.1 700,997 + +1.6 701,005 + -1.3 701,233 + -1.7 701,271 + -0.6 701,307 + +1.7 701,307 + +2.1 701,307 + -0.6 701,335 + +0.4 701,345 + +0.0 701,359 + +0.9 701,404 + +0.0 701,455 + +1.7 701,513 + -0.4 701,542 + +1.2 701,662 + +2.4 701,667 + +1.9 701,784 + +0.3 701,796 + +1.2 701,854 + +1.5
Or see this region's nucleotide sequence