Experiment: D-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g147 and HP15_p187g148 are separated by 155 nucleotides HP15_p187g148 and HP15_p187g149 are separated by 12 nucleotides HP15_p187g149 and HP15_p187g150 are separated by 169 nucleotides
HP15_p187g147: HP15_p187g147 - HD-GYP domain protein, at 147,012 to 148,352
_p187g147
HP15_p187g148: HP15_p187g148 - cytochrome P450 family protein, at 148,508 to 149,896
_p187g148
HP15_p187g149: HP15_p187g149 - 2Fe-2S ferredoxin, at 149,909 to 150,229
_p187g149
HP15_p187g150: HP15_p187g150 - transcriptional regulator, AraC family protein, at 150,399 to 151,430
_p187g150
Position (kb) 148
149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 147.553 kb on + strand, within HP15_p187g147 at 147.564 kb on - strand, within HP15_p187g147 at 147.570 kb on + strand, within HP15_p187g147 at 147.578 kb on - strand, within HP15_p187g147 at 147.578 kb on - strand, within HP15_p187g147 at 147.578 kb on - strand, within HP15_p187g147 at 147.582 kb on + strand, within HP15_p187g147 at 147.590 kb on - strand, within HP15_p187g147 at 147.592 kb on + strand, within HP15_p187g147 at 147.592 kb on + strand, within HP15_p187g147 at 147.600 kb on - strand, within HP15_p187g147 at 147.600 kb on - strand, within HP15_p187g147 at 147.661 kb on + strand, within HP15_p187g147 at 147.661 kb on + strand, within HP15_p187g147 at 147.661 kb on + strand, within HP15_p187g147 at 147.661 kb on + strand, within HP15_p187g147 at 147.661 kb on + strand, within HP15_p187g147 at 147.663 kb on + strand, within HP15_p187g147 at 147.669 kb on - strand, within HP15_p187g147 at 147.669 kb on - strand, within HP15_p187g147 at 147.669 kb on - strand, within HP15_p187g147 at 147.669 kb on - strand, within HP15_p187g147 at 147.669 kb on - strand, within HP15_p187g147 at 147.669 kb on - strand, within HP15_p187g147 at 147.669 kb on - strand, within HP15_p187g147 at 147.669 kb on - strand, within HP15_p187g147 at 147.669 kb on - strand, within HP15_p187g147 at 147.669 kb on - strand, within HP15_p187g147 at 147.671 kb on - strand, within HP15_p187g147 at 147.686 kb on - strand, within HP15_p187g147 at 147.686 kb on - strand, within HP15_p187g147 at 147.735 kb on + strand, within HP15_p187g147 at 147.735 kb on + strand, within HP15_p187g147 at 147.742 kb on + strand, within HP15_p187g147 at 147.742 kb on + strand, within HP15_p187g147 at 147.742 kb on + strand, within HP15_p187g147 at 147.743 kb on - strand, within HP15_p187g147 at 147.750 kb on - strand, within HP15_p187g147 at 147.757 kb on + strand, within HP15_p187g147 at 147.765 kb on - strand, within HP15_p187g147 at 147.785 kb on - strand, within HP15_p187g147 at 147.806 kb on + strand, within HP15_p187g147 at 147.809 kb on - strand, within HP15_p187g147 at 147.814 kb on - strand, within HP15_p187g147 at 147.814 kb on - strand, within HP15_p187g147 at 147.814 kb on - strand, within HP15_p187g147 at 147.837 kb on + strand, within HP15_p187g147 at 147.878 kb on - strand, within HP15_p187g147 at 147.945 kb on - strand, within HP15_p187g147 at 148.038 kb on + strand, within HP15_p187g147 at 148.038 kb on + strand, within HP15_p187g147 at 148.129 kb on + strand, within HP15_p187g147 at 148.137 kb on - strand, within HP15_p187g147 at 148.215 kb on + strand, within HP15_p187g147 at 148.230 kb on + strand at 148.230 kb on + strand at 148.230 kb on + strand at 148.230 kb on + strand at 148.230 kb on + strand at 148.230 kb on + strand at 148.230 kb on + strand at 148.230 kb on + strand at 148.230 kb on + strand at 148.230 kb on + strand at 148.238 kb on - strand at 148.238 kb on - strand at 148.238 kb on - strand at 148.238 kb on - strand at 148.238 kb on - strand at 148.238 kb on - strand at 148.238 kb on - strand at 148.320 kb on + strand at 148.328 kb on - strand at 148.328 kb on - strand at 148.395 kb on + strand at 148.453 kb on - strand at 148.467 kb on + strand at 148.514 kb on - strand at 148.538 kb on - strand at 148.605 kb on - strand at 148.606 kb on + strand at 148.649 kb on + strand, within HP15_p187g148 at 148.668 kb on + strand, within HP15_p187g148 at 148.728 kb on + strand, within HP15_p187g148 at 148.746 kb on - strand, within HP15_p187g148 at 148.870 kb on - strand, within HP15_p187g148 at 148.878 kb on - strand, within HP15_p187g148 at 148.931 kb on - strand, within HP15_p187g148 at 148.970 kb on - strand, within HP15_p187g148 at 148.985 kb on + strand, within HP15_p187g148 at 149.018 kb on - strand, within HP15_p187g148 at 149.028 kb on - strand, within HP15_p187g148 at 149.028 kb on - strand, within HP15_p187g148 at 149.028 kb on - strand, within HP15_p187g148 at 149.028 kb on - strand, within HP15_p187g148 at 149.054 kb on + strand, within HP15_p187g148 at 149.059 kb on + strand, within HP15_p187g148 at 149.145 kb on + strand, within HP15_p187g148 at 149.157 kb on + strand, within HP15_p187g148 at 149.182 kb on - strand, within HP15_p187g148 at 149.197 kb on + strand, within HP15_p187g148 at 149.223 kb on + strand, within HP15_p187g148 at 149.255 kb on + strand, within HP15_p187g148 at 149.263 kb on - strand, within HP15_p187g148 at 149.263 kb on - strand, within HP15_p187g148 at 149.263 kb on - strand, within HP15_p187g148 at 149.288 kb on + strand, within HP15_p187g148 at 149.288 kb on - strand, within HP15_p187g148 at 149.296 kb on - strand, within HP15_p187g148 at 149.306 kb on + strand, within HP15_p187g148 at 149.314 kb on - strand, within HP15_p187g148 at 149.334 kb on + strand, within HP15_p187g148 at 149.380 kb on + strand, within HP15_p187g148 at 149.406 kb on + strand, within HP15_p187g148 at 149.407 kb on - strand, within HP15_p187g148 at 149.407 kb on - strand, within HP15_p187g148 at 149.415 kb on + strand, within HP15_p187g148 at 149.425 kb on - strand, within HP15_p187g148 at 149.436 kb on + strand, within HP15_p187g148 at 149.449 kb on - strand, within HP15_p187g148 at 149.449 kb on - strand, within HP15_p187g148 at 149.449 kb on - strand, within HP15_p187g148 at 149.449 kb on - strand, within HP15_p187g148 at 149.451 kb on + strand, within HP15_p187g148 at 149.451 kb on + strand, within HP15_p187g148 at 149.451 kb on + strand, within HP15_p187g148 at 149.451 kb on + strand, within HP15_p187g148 at 149.459 kb on - strand, within HP15_p187g148 at 149.459 kb on - strand, within HP15_p187g148 at 149.471 kb on - strand, within HP15_p187g148 at 149.591 kb on + strand, within HP15_p187g148 at 149.627 kb on + strand, within HP15_p187g148 at 149.632 kb on + strand, within HP15_p187g148 at 149.725 kb on - strand, within HP15_p187g148 at 149.791 kb on + strand at 149.796 kb on + strand at 149.801 kb on + strand at 149.804 kb on - strand at 149.821 kb on + strand at 149.851 kb on + strand at 149.863 kb on + strand at 149.890 kb on - strand at 149.935 kb on + strand at 149.943 kb on - strand, within HP15_p187g149 at 149.943 kb on - strand, within HP15_p187g149 at 149.943 kb on - strand, within HP15_p187g149 at 149.943 kb on - strand, within HP15_p187g149 at 149.943 kb on - strand, within HP15_p187g149 at 149.948 kb on - strand, within HP15_p187g149 at 149.952 kb on + strand, within HP15_p187g149 at 149.980 kb on + strand, within HP15_p187g149 at 150.017 kb on + strand, within HP15_p187g149 at 150.041 kb on - strand, within HP15_p187g149 at 150.195 kb on + strand, within HP15_p187g149 at 150.201 kb on - strand at 150.250 kb on - strand at 150.260 kb on - strand at 150.440 kb on - strand at 150.440 kb on - strand at 150.440 kb on - strand at 150.440 kb on - strand at 150.442 kb on + strand at 150.442 kb on + strand at 150.445 kb on + strand at 150.450 kb on - strand at 150.450 kb on - strand at 150.450 kb on - strand at 150.450 kb on - strand at 150.450 kb on - strand at 150.522 kb on + strand, within HP15_p187g150 at 150.548 kb on - strand, within HP15_p187g150 at 150.660 kb on + strand, within HP15_p187g150 at 150.661 kb on + strand, within HP15_p187g150 at 150.668 kb on - strand, within HP15_p187g150 at 150.673 kb on - strand, within HP15_p187g150 at 150.673 kb on - strand, within HP15_p187g150 at 150.673 kb on - strand, within HP15_p187g150 at 150.751 kb on + strand, within HP15_p187g150 at 150.845 kb on - strand, within HP15_p187g150 at 150.850 kb on - strand, within HP15_p187g150 at 150.881 kb on - strand, within HP15_p187g150 at 150.881 kb on - strand, within HP15_p187g150 at 150.892 kb on - strand, within HP15_p187g150 at 150.895 kb on + strand, within HP15_p187g150
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine as (N) remove 147,553 + HP15_p187g147 0.40 -0.1 147,564 - HP15_p187g147 0.41 -0.6 147,570 + HP15_p187g147 0.42 +1.8 147,578 - HP15_p187g147 0.42 +0.4 147,578 - HP15_p187g147 0.42 -0.2 147,578 - HP15_p187g147 0.42 +1.8 147,582 + HP15_p187g147 0.43 +1.9 147,590 - HP15_p187g147 0.43 +1.8 147,592 + HP15_p187g147 0.43 -0.3 147,592 + HP15_p187g147 0.43 +0.9 147,600 - HP15_p187g147 0.44 +1.1 147,600 - HP15_p187g147 0.44 +2.0 147,661 + HP15_p187g147 0.48 -0.4 147,661 + HP15_p187g147 0.48 +0.5 147,661 + HP15_p187g147 0.48 +2.1 147,661 + HP15_p187g147 0.48 +0.6 147,661 + HP15_p187g147 0.48 -0.8 147,663 + HP15_p187g147 0.49 +1.6 147,669 - HP15_p187g147 0.49 +0.1 147,669 - HP15_p187g147 0.49 +1.6 147,669 - HP15_p187g147 0.49 +2.1 147,669 - HP15_p187g147 0.49 +2.1 147,669 - HP15_p187g147 0.49 +1.7 147,669 - HP15_p187g147 0.49 +0.2 147,669 - HP15_p187g147 0.49 -0.1 147,669 - HP15_p187g147 0.49 +1.2 147,669 - HP15_p187g147 0.49 -0.4 147,669 - HP15_p187g147 0.49 -0.4 147,671 - HP15_p187g147 0.49 +1.8 147,686 - HP15_p187g147 0.50 +0.7 147,686 - HP15_p187g147 0.50 -0.4 147,735 + HP15_p187g147 0.54 +1.5 147,735 + HP15_p187g147 0.54 -0.8 147,742 + HP15_p187g147 0.54 +1.3 147,742 + HP15_p187g147 0.54 +2.5 147,742 + HP15_p187g147 0.54 -0.6 147,743 - HP15_p187g147 0.55 +0.3 147,750 - HP15_p187g147 0.55 +1.9 147,757 + HP15_p187g147 0.56 -1.3 147,765 - HP15_p187g147 0.56 +1.2 147,785 - HP15_p187g147 0.58 -1.0 147,806 + HP15_p187g147 0.59 +1.9 147,809 - HP15_p187g147 0.59 +1.9 147,814 - HP15_p187g147 0.60 -0.9 147,814 - HP15_p187g147 0.60 -0.1 147,814 - HP15_p187g147 0.60 +1.8 147,837 + HP15_p187g147 0.62 +0.5 147,878 - HP15_p187g147 0.65 -0.4 147,945 - HP15_p187g147 0.70 +1.0 148,038 + HP15_p187g147 0.77 -1.1 148,038 + HP15_p187g147 0.77 +0.4 148,129 + HP15_p187g147 0.83 +1.5 148,137 - HP15_p187g147 0.84 +0.5 148,215 + HP15_p187g147 0.90 +1.7 148,230 + -1.1 148,230 + -1.6 148,230 + -0.8 148,230 + -0.6 148,230 + +1.7 148,230 + -1.3 148,230 + -0.3 148,230 + -0.4 148,230 + -0.1 148,230 + -1.2 148,238 - +0.5 148,238 - +0.2 148,238 - -0.2 148,238 - -0.6 148,238 - -1.4 148,238 - -0.3 148,238 - -0.3 148,320 + -0.1 148,328 - -0.7 148,328 - +1.5 148,395 + -1.7 148,453 - -1.0 148,467 + -2.4 148,514 - +0.0 148,538 - +2.0 148,605 - -1.1 148,606 + +0.9 148,649 + HP15_p187g148 0.10 -0.6 148,668 + HP15_p187g148 0.12 -0.6 148,728 + HP15_p187g148 0.16 -0.7 148,746 - HP15_p187g148 0.17 -1.3 148,870 - HP15_p187g148 0.26 -0.4 148,878 - HP15_p187g148 0.27 -0.6 148,931 - HP15_p187g148 0.30 -0.7 148,970 - HP15_p187g148 0.33 +1.1 148,985 + HP15_p187g148 0.34 -1.3 149,018 - HP15_p187g148 0.37 +1.5 149,028 - HP15_p187g148 0.37 -0.8 149,028 - HP15_p187g148 0.37 +0.0 149,028 - HP15_p187g148 0.37 -1.2 149,028 - HP15_p187g148 0.37 +0.1 149,054 + HP15_p187g148 0.39 -1.0 149,059 + HP15_p187g148 0.40 +1.7 149,145 + HP15_p187g148 0.46 +0.3 149,157 + HP15_p187g148 0.47 -0.5 149,182 - HP15_p187g148 0.49 +0.1 149,197 + HP15_p187g148 0.50 +1.5 149,223 + HP15_p187g148 0.51 +0.3 149,255 + HP15_p187g148 0.54 +0.7 149,263 - HP15_p187g148 0.54 +0.2 149,263 - HP15_p187g148 0.54 +0.2 149,263 - HP15_p187g148 0.54 +0.0 149,288 + HP15_p187g148 0.56 +2.1 149,288 - HP15_p187g148 0.56 -0.5 149,296 - HP15_p187g148 0.57 -2.2 149,306 + HP15_p187g148 0.57 +0.5 149,314 - HP15_p187g148 0.58 +0.8 149,334 + HP15_p187g148 0.59 -0.1 149,380 + HP15_p187g148 0.63 -0.5 149,406 + HP15_p187g148 0.65 -1.2 149,407 - HP15_p187g148 0.65 -0.5 149,407 - HP15_p187g148 0.65 -0.4 149,415 + HP15_p187g148 0.65 -0.3 149,425 - HP15_p187g148 0.66 -0.9 149,436 + HP15_p187g148 0.67 -0.0 149,449 - HP15_p187g148 0.68 -0.1 149,449 - HP15_p187g148 0.68 +0.7 149,449 - HP15_p187g148 0.68 -0.5 149,449 - HP15_p187g148 0.68 +1.7 149,451 + HP15_p187g148 0.68 -0.1 149,451 + HP15_p187g148 0.68 -1.1 149,451 + HP15_p187g148 0.68 -3.2 149,451 + HP15_p187g148 0.68 -0.6 149,459 - HP15_p187g148 0.68 -1.0 149,459 - HP15_p187g148 0.68 -0.2 149,471 - HP15_p187g148 0.69 +0.2 149,591 + HP15_p187g148 0.78 -1.9 149,627 + HP15_p187g148 0.81 -0.6 149,632 + HP15_p187g148 0.81 +1.1 149,725 - HP15_p187g148 0.88 +1.4 149,791 + +1.8 149,796 + -0.3 149,801 + -0.3 149,804 - -0.5 149,821 + -1.9 149,851 + -0.0 149,863 + -0.5 149,890 - +1.0 149,935 + -0.6 149,943 - HP15_p187g149 0.11 +1.7 149,943 - HP15_p187g149 0.11 -1.3 149,943 - HP15_p187g149 0.11 +2.1 149,943 - HP15_p187g149 0.11 +0.2 149,943 - HP15_p187g149 0.11 -0.7 149,948 - HP15_p187g149 0.12 +1.8 149,952 + HP15_p187g149 0.13 -1.1 149,980 + HP15_p187g149 0.22 +0.2 150,017 + HP15_p187g149 0.34 +1.1 150,041 - HP15_p187g149 0.41 +0.1 150,195 + HP15_p187g149 0.89 +0.5 150,201 - -0.5 150,250 - -0.6 150,260 - -0.5 150,440 - +1.7 150,440 - +1.5 150,440 - +0.4 150,440 - -0.5 150,442 + -0.3 150,442 + -0.8 150,445 + +1.7 150,450 - -1.4 150,450 - -0.0 150,450 - -1.1 150,450 - -0.3 150,450 - -0.1 150,522 + HP15_p187g150 0.12 -1.7 150,548 - HP15_p187g150 0.14 -0.6 150,660 + HP15_p187g150 0.25 -0.9 150,661 + HP15_p187g150 0.25 -1.7 150,668 - HP15_p187g150 0.26 -1.0 150,673 - HP15_p187g150 0.27 +2.3 150,673 - HP15_p187g150 0.27 +1.8 150,673 - HP15_p187g150 0.27 -0.9 150,751 + HP15_p187g150 0.34 +0.9 150,845 - HP15_p187g150 0.43 +0.3 150,850 - HP15_p187g150 0.44 -0.7 150,881 - HP15_p187g150 0.47 +0.6 150,881 - HP15_p187g150 0.47 +2.0 150,892 - HP15_p187g150 0.48 -1.0 150,895 + HP15_p187g150 0.48 -0.8
Or see this region's nucleotide sequence