Strain Fitness in Marinobacter adhaerens HP15 around HP15_3751

Experiment: D-Alanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3749 and HP15_3750 overlap by 8 nucleotidesHP15_3750 and HP15_3751 are separated by 81 nucleotidesHP15_3751 and HP15_3752 are separated by 4 nucleotidesHP15_3752 and HP15_3753 are separated by 112 nucleotides HP15_3749: HP15_3749 - coproporphyrinogen III oxidase, aerobic, at 3,970,651 to 3,971,145 _3749 HP15_3750: HP15_3750 - shikimate dehydrogenase, at 3,971,138 to 3,971,965 _3750 HP15_3751: HP15_3751 - MotA/TolQ/ExbB proton channel, at 3,972,047 to 3,972,793 _3751 HP15_3752: HP15_3752 - flagellar motor protein MotB, at 3,972,798 to 3,973,631 _3752 HP15_3753: HP15_3753 - conserved hypothetical protein, at 3,973,744 to 3,974,061 _3753 Position (kb) 3972 3973Strain fitness (log2 ratio) -1 0 1 2at 3971.978 kb on + strandat 3972.065 kb on - strandat 3972.134 kb on - strand, within HP15_3751at 3972.134 kb on - strand, within HP15_3751at 3972.150 kb on + strand, within HP15_3751at 3972.150 kb on + strand, within HP15_3751at 3972.158 kb on - strand, within HP15_3751at 3972.192 kb on + strand, within HP15_3751at 3972.233 kb on - strand, within HP15_3751at 3972.271 kb on + strand, within HP15_3751at 3972.271 kb on + strand, within HP15_3751at 3972.279 kb on - strand, within HP15_3751at 3972.407 kb on + strand, within HP15_3751at 3972.415 kb on - strand, within HP15_3751at 3972.435 kb on - strand, within HP15_3751at 3972.435 kb on - strand, within HP15_3751at 3972.449 kb on - strand, within HP15_3751at 3972.507 kb on - strand, within HP15_3751at 3972.517 kb on + strand, within HP15_3751at 3972.543 kb on + strand, within HP15_3751at 3972.546 kb on - strand, within HP15_3751at 3972.554 kb on + strand, within HP15_3751at 3972.571 kb on + strand, within HP15_3751at 3972.579 kb on - strand, within HP15_3751at 3972.586 kb on - strand, within HP15_3751at 3972.616 kb on + strand, within HP15_3751at 3972.645 kb on - strand, within HP15_3751at 3972.750 kb on + strandat 3972.750 kb on + strandat 3972.755 kb on + strandat 3972.765 kb on - strandat 3972.848 kb on + strandat 3972.946 kb on - strand, within HP15_3752at 3972.970 kb on + strand, within HP15_3752at 3973.087 kb on + strand, within HP15_3752at 3973.174 kb on + strand, within HP15_3752at 3973.194 kb on + strand, within HP15_3752at 3973.388 kb on + strand, within HP15_3752at 3973.438 kb on - strand, within HP15_3752at 3973.535 kb on - strand, within HP15_3752at 3973.642 kb on - strandat 3973.677 kb on + strandat 3973.691 kb on + strandat 3973.691 kb on + strandat 3973.699 kb on - strandat 3973.744 kb on - strandat 3973.768 kb on - strandat 3973.780 kb on + strand, within HP15_3753

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine as (N)
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3,971,978 + -0.1
3,972,065 - +2.1
3,972,134 - HP15_3751 0.12 -0.2
3,972,134 - HP15_3751 0.12 -0.4
3,972,150 + HP15_3751 0.14 +0.6
3,972,150 + HP15_3751 0.14 -0.6
3,972,158 - HP15_3751 0.15 -1.4
3,972,192 + HP15_3751 0.19 -0.1
3,972,233 - HP15_3751 0.25 +0.2
3,972,271 + HP15_3751 0.30 +2.3
3,972,271 + HP15_3751 0.30 +2.5
3,972,279 - HP15_3751 0.31 -0.0
3,972,407 + HP15_3751 0.48 +1.4
3,972,415 - HP15_3751 0.49 +2.7
3,972,435 - HP15_3751 0.52 +0.7
3,972,435 - HP15_3751 0.52 -1.0
3,972,449 - HP15_3751 0.54 +1.8
3,972,507 - HP15_3751 0.62 +1.7
3,972,517 + HP15_3751 0.63 +1.9
3,972,543 + HP15_3751 0.66 -0.1
3,972,546 - HP15_3751 0.67 +2.0
3,972,554 + HP15_3751 0.68 -0.0
3,972,571 + HP15_3751 0.70 -0.7
3,972,579 - HP15_3751 0.71 +2.1
3,972,586 - HP15_3751 0.72 +1.8
3,972,616 + HP15_3751 0.76 +2.4
3,972,645 - HP15_3751 0.80 +2.0
3,972,750 + +2.5
3,972,750 + -0.4
3,972,755 + +1.9
3,972,765 - -0.2
3,972,848 + +1.8
3,972,946 - HP15_3752 0.18 +0.2
3,972,970 + HP15_3752 0.21 +1.5
3,973,087 + HP15_3752 0.35 -1.2
3,973,174 + HP15_3752 0.45 +1.8
3,973,194 + HP15_3752 0.47 +0.9
3,973,388 + HP15_3752 0.71 +0.2
3,973,438 - HP15_3752 0.77 +1.9
3,973,535 - HP15_3752 0.88 -0.2
3,973,642 - +2.0
3,973,677 + +0.6
3,973,691 + +2.2
3,973,691 + -1.0
3,973,699 - -0.1
3,973,744 - -1.3
3,973,768 - -0.0
3,973,780 + HP15_3753 0.11 -0.3

Or see this region's nucleotide sequence