Experiment: D-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3749 and HP15_3750 overlap by 8 nucleotides HP15_3750 and HP15_3751 are separated by 81 nucleotides HP15_3751 and HP15_3752 are separated by 4 nucleotides HP15_3752 and HP15_3753 are separated by 112 nucleotides
HP15_3749: HP15_3749 - coproporphyrinogen III oxidase, aerobic, at 3,970,651 to 3,971,145
_3749
HP15_3750: HP15_3750 - shikimate dehydrogenase, at 3,971,138 to 3,971,965
_3750
HP15_3751: HP15_3751 - MotA/TolQ/ExbB proton channel, at 3,972,047 to 3,972,793
_3751
HP15_3752: HP15_3752 - flagellar motor protein MotB, at 3,972,798 to 3,973,631
_3752
HP15_3753: HP15_3753 - conserved hypothetical protein, at 3,973,744 to 3,974,061
_3753
Position (kb)
3972
3973 Strain fitness (log2 ratio)
-1
0
1
2 at 3971.978 kb on + strand at 3972.065 kb on - strand at 3972.134 kb on - strand, within HP15_3751 at 3972.134 kb on - strand, within HP15_3751 at 3972.150 kb on + strand, within HP15_3751 at 3972.150 kb on + strand, within HP15_3751 at 3972.158 kb on - strand, within HP15_3751 at 3972.192 kb on + strand, within HP15_3751 at 3972.233 kb on - strand, within HP15_3751 at 3972.271 kb on + strand, within HP15_3751 at 3972.271 kb on + strand, within HP15_3751 at 3972.279 kb on - strand, within HP15_3751 at 3972.407 kb on + strand, within HP15_3751 at 3972.415 kb on - strand, within HP15_3751 at 3972.435 kb on - strand, within HP15_3751 at 3972.435 kb on - strand, within HP15_3751 at 3972.449 kb on - strand, within HP15_3751 at 3972.507 kb on - strand, within HP15_3751 at 3972.517 kb on + strand, within HP15_3751 at 3972.543 kb on + strand, within HP15_3751 at 3972.546 kb on - strand, within HP15_3751 at 3972.554 kb on + strand, within HP15_3751 at 3972.571 kb on + strand, within HP15_3751 at 3972.579 kb on - strand, within HP15_3751 at 3972.586 kb on - strand, within HP15_3751 at 3972.616 kb on + strand, within HP15_3751 at 3972.645 kb on - strand, within HP15_3751 at 3972.750 kb on + strand at 3972.750 kb on + strand at 3972.755 kb on + strand at 3972.765 kb on - strand at 3972.848 kb on + strand at 3972.946 kb on - strand, within HP15_3752 at 3972.970 kb on + strand, within HP15_3752 at 3973.087 kb on + strand, within HP15_3752 at 3973.174 kb on + strand, within HP15_3752 at 3973.194 kb on + strand, within HP15_3752 at 3973.388 kb on + strand, within HP15_3752 at 3973.438 kb on - strand, within HP15_3752 at 3973.535 kb on - strand, within HP15_3752 at 3973.642 kb on - strand at 3973.677 kb on + strand at 3973.691 kb on + strand at 3973.691 kb on + strand at 3973.699 kb on - strand at 3973.744 kb on - strand at 3973.768 kb on - strand at 3973.780 kb on + strand, within HP15_3753
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine as (N) remove 3,971,978 + -0.1 3,972,065 - +2.1 3,972,134 - HP15_3751 0.12 -0.2 3,972,134 - HP15_3751 0.12 -0.4 3,972,150 + HP15_3751 0.14 +0.6 3,972,150 + HP15_3751 0.14 -0.6 3,972,158 - HP15_3751 0.15 -1.4 3,972,192 + HP15_3751 0.19 -0.1 3,972,233 - HP15_3751 0.25 +0.2 3,972,271 + HP15_3751 0.30 +2.3 3,972,271 + HP15_3751 0.30 +2.5 3,972,279 - HP15_3751 0.31 -0.0 3,972,407 + HP15_3751 0.48 +1.4 3,972,415 - HP15_3751 0.49 +2.7 3,972,435 - HP15_3751 0.52 +0.7 3,972,435 - HP15_3751 0.52 -1.0 3,972,449 - HP15_3751 0.54 +1.8 3,972,507 - HP15_3751 0.62 +1.7 3,972,517 + HP15_3751 0.63 +1.9 3,972,543 + HP15_3751 0.66 -0.1 3,972,546 - HP15_3751 0.67 +2.0 3,972,554 + HP15_3751 0.68 -0.0 3,972,571 + HP15_3751 0.70 -0.7 3,972,579 - HP15_3751 0.71 +2.1 3,972,586 - HP15_3751 0.72 +1.8 3,972,616 + HP15_3751 0.76 +2.4 3,972,645 - HP15_3751 0.80 +2.0 3,972,750 + +2.5 3,972,750 + -0.4 3,972,755 + +1.9 3,972,765 - -0.2 3,972,848 + +1.8 3,972,946 - HP15_3752 0.18 +0.2 3,972,970 + HP15_3752 0.21 +1.5 3,973,087 + HP15_3752 0.35 -1.2 3,973,174 + HP15_3752 0.45 +1.8 3,973,194 + HP15_3752 0.47 +0.9 3,973,388 + HP15_3752 0.71 +0.2 3,973,438 - HP15_3752 0.77 +1.9 3,973,535 - HP15_3752 0.88 -0.2 3,973,642 - +2.0 3,973,677 + +0.6 3,973,691 + +2.2 3,973,691 + -1.0 3,973,699 - -0.1 3,973,744 - -1.3 3,973,768 - -0.0 3,973,780 + HP15_3753 0.11 -0.3
Or see this region's nucleotide sequence