Experiment: D-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_309 and HP15_310 are separated by 151 nucleotides HP15_310 and HP15_311 are separated by 338 nucleotides HP15_311 and HP15_312 are separated by 19 nucleotides
HP15_309: HP15_309 - DNA helicase, ATP-dependent, RecG, at 299,540 to 301,615
_309
HP15_310: HP15_310 - signal transduction protein, at 301,767 to 303,131
_310
HP15_311: HP15_311 - protein containing domain of unknown function DUF2489, at 303,470 to 303,931
_311
HP15_312: HP15_312 - protein containing Molybdopterin oxidoreductase/molybdopterin dinucleotide-binding region, at 303,951 to 306,245
_312
Position (kb) 301
302
303
304 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 300.767 kb on - strand, within HP15_309 at 300.863 kb on + strand, within HP15_309 at 300.871 kb on - strand, within HP15_309 at 300.871 kb on - strand, within HP15_309 at 301.036 kb on + strand, within HP15_309 at 301.044 kb on - strand, within HP15_309 at 301.058 kb on + strand, within HP15_309 at 301.122 kb on - strand, within HP15_309 at 301.150 kb on + strand, within HP15_309 at 301.264 kb on - strand, within HP15_309 at 301.439 kb on + strand at 301.486 kb on + strand at 301.501 kb on + strand at 301.566 kb on - strand at 301.618 kb on - strand at 301.698 kb on + strand at 301.816 kb on + strand at 301.857 kb on - strand at 301.874 kb on + strand at 301.877 kb on - strand at 301.882 kb on - strand at 302.003 kb on + strand, within HP15_310 at 302.016 kb on - strand, within HP15_310 at 302.051 kb on - strand, within HP15_310 at 302.053 kb on + strand, within HP15_310 at 302.087 kb on + strand, within HP15_310 at 302.106 kb on - strand, within HP15_310 at 302.134 kb on + strand, within HP15_310 at 302.305 kb on + strand, within HP15_310 at 302.313 kb on - strand, within HP15_310 at 302.313 kb on - strand, within HP15_310 at 302.426 kb on + strand, within HP15_310 at 302.495 kb on + strand, within HP15_310 at 302.655 kb on - strand, within HP15_310 at 302.681 kb on - strand, within HP15_310 at 302.738 kb on - strand, within HP15_310 at 302.778 kb on - strand, within HP15_310 at 302.881 kb on + strand, within HP15_310 at 303.224 kb on - strand at 303.357 kb on + strand at 303.443 kb on + strand at 303.634 kb on - strand, within HP15_311 at 303.795 kb on + strand, within HP15_311 at 303.802 kb on - strand, within HP15_311 at 303.805 kb on + strand, within HP15_311 at 303.818 kb on - strand, within HP15_311 at 303.957 kb on - strand at 303.957 kb on - strand at 303.966 kb on - strand at 303.986 kb on - strand at 304.056 kb on - strand at 304.085 kb on - strand at 304.101 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine as (N) remove 300,767 - HP15_309 0.59 -0.2 300,863 + HP15_309 0.64 +0.1 300,871 - HP15_309 0.64 +1.6 300,871 - HP15_309 0.64 -0.7 301,036 + HP15_309 0.72 +3.4 301,044 - HP15_309 0.72 +0.2 301,058 + HP15_309 0.73 +1.7 301,122 - HP15_309 0.76 +2.0 301,150 + HP15_309 0.78 +1.0 301,264 - HP15_309 0.83 -2.3 301,439 + +0.3 301,486 + +0.1 301,501 + +0.1 301,566 - -1.6 301,618 - -0.7 301,698 + +0.8 301,816 + -1.7 301,857 - -0.8 301,874 + -0.0 301,877 - -0.0 301,882 - -0.3 302,003 + HP15_310 0.17 -0.5 302,016 - HP15_310 0.18 -0.9 302,051 - HP15_310 0.21 -2.1 302,053 + HP15_310 0.21 +0.4 302,087 + HP15_310 0.23 -0.4 302,106 - HP15_310 0.25 +0.6 302,134 + HP15_310 0.27 -2.7 302,305 + HP15_310 0.39 -0.5 302,313 - HP15_310 0.40 +1.0 302,313 - HP15_310 0.40 +1.2 302,426 + HP15_310 0.48 +1.5 302,495 + HP15_310 0.53 -0.3 302,655 - HP15_310 0.65 +2.6 302,681 - HP15_310 0.67 +0.3 302,738 - HP15_310 0.71 +0.1 302,778 - HP15_310 0.74 +0.3 302,881 + HP15_310 0.82 -0.0 303,224 - +2.1 303,357 + -0.1 303,443 + +1.4 303,634 - HP15_311 0.35 -0.6 303,795 + HP15_311 0.70 +1.5 303,802 - HP15_311 0.72 -1.2 303,805 + HP15_311 0.73 +1.7 303,818 - HP15_311 0.75 -0.2 303,957 - -1.0 303,957 - -0.6 303,966 - -0.3 303,986 - -0.3 304,056 - -1.1 304,085 - -1.0 304,101 + +0.4
Or see this region's nucleotide sequence