Experiment: D-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2763 and HP15_2764 are separated by 112 nucleotides HP15_2764 and HP15_2765 are separated by 13 nucleotides HP15_2765 and HP15_2766 are separated by 16 nucleotides
HP15_2763: HP15_2763 - methyltransferase, UbiE/COQ5 family protein, at 2,917,115 to 2,917,747
_2763
HP15_2764: HP15_2764 - membrane protein, at 2,917,860 to 2,918,063
_2764
HP15_2765: HP15_2765 - conserved hypothetical protein, membrane, at 2,918,077 to 2,918,469
_2765
HP15_2766: HP15_2766 - sensory box/GGDEF family protein, at 2,918,486 to 2,919,520
_2766
Position (kb)
2918
2919 Strain fitness (log2 ratio)
-1
0
1
2 at 2917.186 kb on - strand, within HP15_2763 at 2917.408 kb on - strand, within HP15_2763 at 2917.455 kb on + strand, within HP15_2763 at 2917.574 kb on - strand, within HP15_2763 at 2917.596 kb on - strand, within HP15_2763 at 2917.657 kb on - strand, within HP15_2763 at 2917.657 kb on - strand, within HP15_2763 at 2917.751 kb on + strand at 2917.803 kb on - strand at 2917.837 kb on + strand at 2917.867 kb on + strand at 2917.875 kb on - strand at 2917.875 kb on - strand at 2917.913 kb on + strand, within HP15_2764 at 2917.986 kb on + strand, within HP15_2764 at 2917.986 kb on + strand, within HP15_2764 at 2917.986 kb on + strand, within HP15_2764 at 2918.066 kb on - strand at 2918.095 kb on - strand at 2918.102 kb on - strand at 2918.155 kb on + strand, within HP15_2765 at 2918.163 kb on - strand, within HP15_2765 at 2918.165 kb on + strand, within HP15_2765 at 2918.165 kb on + strand, within HP15_2765 at 2918.173 kb on - strand, within HP15_2765 at 2918.196 kb on + strand, within HP15_2765 at 2918.199 kb on - strand, within HP15_2765 at 2918.209 kb on - strand, within HP15_2765 at 2918.295 kb on + strand, within HP15_2765 at 2918.427 kb on - strand, within HP15_2765 at 2918.482 kb on - strand at 2918.536 kb on - strand at 2918.631 kb on + strand, within HP15_2766 at 2918.727 kb on + strand, within HP15_2766 at 2918.896 kb on + strand, within HP15_2766 at 2919.042 kb on - strand, within HP15_2766 at 2919.101 kb on + strand, within HP15_2766 at 2919.146 kb on + strand, within HP15_2766 at 2919.153 kb on + strand, within HP15_2766 at 2919.417 kb on + strand at 2919.436 kb on - strand at 2919.436 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine as (N) remove 2,917,186 - HP15_2763 0.11 +1.9 2,917,408 - HP15_2763 0.46 -0.1 2,917,455 + HP15_2763 0.54 -0.0 2,917,574 - HP15_2763 0.73 +0.4 2,917,596 - HP15_2763 0.76 +1.7 2,917,657 - HP15_2763 0.86 +0.1 2,917,657 - HP15_2763 0.86 -0.1 2,917,751 + -0.6 2,917,803 - -0.7 2,917,837 + +0.1 2,917,867 + -0.5 2,917,875 - -0.8 2,917,875 - -0.3 2,917,913 + HP15_2764 0.26 -0.3 2,917,986 + HP15_2764 0.62 +2.1 2,917,986 + HP15_2764 0.62 -0.1 2,917,986 + HP15_2764 0.62 -0.3 2,918,066 - -0.0 2,918,095 - -0.1 2,918,102 - +0.1 2,918,155 + HP15_2765 0.20 -0.4 2,918,163 - HP15_2765 0.22 +1.2 2,918,165 + HP15_2765 0.22 -0.1 2,918,165 + HP15_2765 0.22 -1.3 2,918,173 - HP15_2765 0.24 -0.7 2,918,196 + HP15_2765 0.30 -0.6 2,918,199 - HP15_2765 0.31 -1.0 2,918,209 - HP15_2765 0.34 +0.0 2,918,295 + HP15_2765 0.55 +2.1 2,918,427 - HP15_2765 0.89 -0.4 2,918,482 - +0.1 2,918,536 - +1.7 2,918,631 + HP15_2766 0.14 +0.3 2,918,727 + HP15_2766 0.23 -0.8 2,918,896 + HP15_2766 0.40 +2.1 2,919,042 - HP15_2766 0.54 +0.1 2,919,101 + HP15_2766 0.59 -0.7 2,919,146 + HP15_2766 0.64 +2.0 2,919,153 + HP15_2766 0.64 -0.3 2,919,417 + +0.1 2,919,436 - +0.2 2,919,436 - +2.1
Or see this region's nucleotide sequence