Experiment: D-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2664 and HP15_2665 are separated by 69 nucleotides HP15_2665 and HP15_2666 are separated by 10 nucleotides HP15_2666 and HP15_2667 are separated by 97 nucleotides
HP15_2664: HP15_2664 - peptidase M48, Ste24p, at 2,814,268 to 2,815,059
_2664
HP15_2665: HP15_2665 - conserved hypothetical protein, membrane, at 2,815,129 to 2,815,641
_2665
HP15_2666: HP15_2666 - membrane protein, at 2,815,652 to 2,815,930
_2666
HP15_2667: HP15_2667 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain protein, at 2,816,028 to 2,816,810
_2667
Position (kb)
2815
2816 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2814.703 kb on - strand, within HP15_2664 at 2814.770 kb on - strand, within HP15_2664 at 2814.777 kb on + strand, within HP15_2664 at 2814.878 kb on + strand, within HP15_2664 at 2814.896 kb on + strand, within HP15_2664 at 2814.904 kb on - strand, within HP15_2664 at 2815.056 kb on - strand at 2815.082 kb on - strand at 2815.165 kb on - strand at 2815.165 kb on - strand at 2815.212 kb on + strand, within HP15_2665 at 2815.264 kb on - strand, within HP15_2665 at 2815.418 kb on + strand, within HP15_2665 at 2815.452 kb on + strand, within HP15_2665 at 2815.452 kb on + strand, within HP15_2665 at 2815.452 kb on + strand, within HP15_2665 at 2815.460 kb on - strand, within HP15_2665 at 2815.460 kb on - strand, within HP15_2665 at 2815.460 kb on - strand, within HP15_2665 at 2815.460 kb on - strand, within HP15_2665 at 2815.486 kb on - strand, within HP15_2665 at 2815.588 kb on + strand, within HP15_2665 at 2815.745 kb on + strand, within HP15_2666 at 2815.943 kb on + strand at 2816.024 kb on + strand at 2816.249 kb on + strand, within HP15_2667 at 2816.483 kb on + strand, within HP15_2667 at 2816.488 kb on + strand, within HP15_2667 at 2816.496 kb on - strand, within HP15_2667 at 2816.496 kb on - strand, within HP15_2667 at 2816.524 kb on - strand, within HP15_2667 at 2816.534 kb on - strand, within HP15_2667 at 2816.580 kb on + strand, within HP15_2667 at 2816.583 kb on - strand, within HP15_2667 at 2816.583 kb on - strand, within HP15_2667 at 2816.610 kb on + strand, within HP15_2667 at 2816.785 kb on - strand at 2816.812 kb on + strand at 2816.812 kb on + strand at 2816.820 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine as (N) remove 2,814,703 - HP15_2664 0.55 +1.6 2,814,770 - HP15_2664 0.63 -0.8 2,814,777 + HP15_2664 0.64 +0.1 2,814,878 + HP15_2664 0.77 +0.2 2,814,896 + HP15_2664 0.79 +2.3 2,814,904 - HP15_2664 0.80 +0.2 2,815,056 - +2.1 2,815,082 - +0.1 2,815,165 - +1.2 2,815,165 - -0.8 2,815,212 + HP15_2665 0.16 -1.8 2,815,264 - HP15_2665 0.26 -0.4 2,815,418 + HP15_2665 0.56 +0.2 2,815,452 + HP15_2665 0.63 -0.7 2,815,452 + HP15_2665 0.63 +1.4 2,815,452 + HP15_2665 0.63 +0.2 2,815,460 - HP15_2665 0.65 +0.3 2,815,460 - HP15_2665 0.65 +0.2 2,815,460 - HP15_2665 0.65 +0.7 2,815,460 - HP15_2665 0.65 +1.7 2,815,486 - HP15_2665 0.70 +2.3 2,815,588 + HP15_2665 0.89 +0.2 2,815,745 + HP15_2666 0.33 -0.6 2,815,943 + +2.2 2,816,024 + -0.4 2,816,249 + HP15_2667 0.28 -0.5 2,816,483 + HP15_2667 0.58 -0.7 2,816,488 + HP15_2667 0.59 -1.6 2,816,496 - HP15_2667 0.60 +0.0 2,816,496 - HP15_2667 0.60 +0.8 2,816,524 - HP15_2667 0.63 +1.7 2,816,534 - HP15_2667 0.65 -0.6 2,816,580 + HP15_2667 0.70 +2.2 2,816,583 - HP15_2667 0.71 -0.9 2,816,583 - HP15_2667 0.71 -0.4 2,816,610 + HP15_2667 0.74 +0.4 2,816,785 - -0.3 2,816,812 + +1.4 2,816,812 + +1.7 2,816,820 - +0.0
Or see this region's nucleotide sequence