Experiment: D-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1907 and HP15_1908 are separated by 6 nucleotides HP15_1908 and HP15_1909 are separated by 3 nucleotides HP15_1909 and HP15_1910 are separated by 455 nucleotides
HP15_1907: HP15_1907 - coenzyme F390 synthetase-like protein, at 2,017,789 to 2,019,153
_1907
HP15_1908: HP15_1908 - glycosyl transferase, family 2, at 2,019,160 to 2,020,089
_1908
HP15_1909: HP15_1909 - fibronectin, type III domain protein-like protein, at 2,020,093 to 2,021,283
_1909
HP15_1910: HP15_1910 - TPR/glycosyl transferase domain protein, at 2,021,739 to 2,023,139
_1910
Position (kb)
2020
2021
2022 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2019.142 kb on + strand at 2019.315 kb on + strand, within HP15_1908 at 2019.364 kb on + strand, within HP15_1908 at 2019.372 kb on - strand, within HP15_1908 at 2019.489 kb on + strand, within HP15_1908 at 2019.582 kb on + strand, within HP15_1908 at 2019.582 kb on + strand, within HP15_1908 at 2019.593 kb on + strand, within HP15_1908 at 2019.685 kb on - strand, within HP15_1908 at 2019.729 kb on - strand, within HP15_1908 at 2019.827 kb on - strand, within HP15_1908 at 2019.864 kb on + strand, within HP15_1908 at 2019.907 kb on - strand, within HP15_1908 at 2019.990 kb on - strand, within HP15_1908 at 2020.117 kb on - strand at 2020.828 kb on - strand, within HP15_1909 at 2021.037 kb on + strand, within HP15_1909 at 2021.329 kb on + strand at 2021.420 kb on + strand at 2021.428 kb on - strand at 2021.491 kb on - strand at 2021.560 kb on - strand at 2021.595 kb on - strand at 2021.772 kb on + strand at 2021.950 kb on - strand, within HP15_1910 at 2022.069 kb on - strand, within HP15_1910 at 2022.163 kb on + strand, within HP15_1910 at 2022.273 kb on - strand, within HP15_1910
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine as (N) remove 2,019,142 + -1.4 2,019,315 + HP15_1908 0.17 +1.8 2,019,364 + HP15_1908 0.22 +2.1 2,019,372 - HP15_1908 0.23 -1.2 2,019,489 + HP15_1908 0.35 -0.7 2,019,582 + HP15_1908 0.45 -0.6 2,019,582 + HP15_1908 0.45 +0.1 2,019,593 + HP15_1908 0.47 +1.6 2,019,685 - HP15_1908 0.56 -0.2 2,019,729 - HP15_1908 0.61 +1.8 2,019,827 - HP15_1908 0.72 +2.5 2,019,864 + HP15_1908 0.76 +1.0 2,019,907 - HP15_1908 0.80 +0.9 2,019,990 - HP15_1908 0.89 +1.8 2,020,117 - +0.6 2,020,828 - HP15_1909 0.62 -2.6 2,021,037 + HP15_1909 0.79 -1.8 2,021,329 + +0.4 2,021,420 + +0.3 2,021,428 - +0.9 2,021,491 - -0.5 2,021,560 - +2.5 2,021,595 - +1.7 2,021,772 + +1.9 2,021,950 - HP15_1910 0.15 +2.0 2,022,069 - HP15_1910 0.24 -0.6 2,022,163 + HP15_1910 0.30 +1.6 2,022,273 - HP15_1910 0.38 -1.6
Or see this region's nucleotide sequence