Strain Fitness in Marinobacter adhaerens HP15 around HP15_163

Experiment: D-Alanine as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_161 and HP15_162 are separated by 659 nucleotidesHP15_162 and HP15_163 are separated by 68 nucleotidesHP15_163 and HP15_164 are separated by 65 nucleotidesHP15_164 and HP15_165 are separated by 45 nucleotidesHP15_165 and HP15_166 are separated by 60 nucleotides HP15_161: HP15_161 - secreted protein, at 158,594 to 158,857 _161 HP15_162: HP15_162 - hypothetical protein, at 159,517 to 159,714 _162 HP15_163: HP15_163 - cation efflux family protein, at 159,783 to 160,688 _163 HP15_164: HP15_164 - conserved hypothetical protein, at 160,754 to 160,948 _164 HP15_165: HP15_165 - conserved hypothetical protein, at 160,994 to 161,146 _165 HP15_166: HP15_166 - cation efflux system protein, at 161,207 to 162,103 _166 Position (kb) 159 160 161Strain fitness (log2 ratio) -2 -1 0 1 2 3at 158.815 kb on + strand, within HP15_161at 158.815 kb on + strand, within HP15_161at 158.818 kb on - strand, within HP15_161at 158.873 kb on + strandat 158.972 kb on + strandat 159.035 kb on - strandat 159.037 kb on + strandat 159.040 kb on - strandat 159.066 kb on + strandat 159.074 kb on - strandat 159.119 kb on - strandat 159.129 kb on - strandat 159.185 kb on - strandat 159.214 kb on + strandat 159.217 kb on - strandat 159.222 kb on - strandat 159.260 kb on + strandat 159.310 kb on + strandat 159.361 kb on + strandat 159.393 kb on + strandat 159.411 kb on - strandat 159.459 kb on - strandat 159.543 kb on + strand, within HP15_162at 159.586 kb on + strand, within HP15_162at 159.594 kb on - strand, within HP15_162at 159.713 kb on + strandat 159.753 kb on + strandat 159.777 kb on - strandat 159.817 kb on - strandat 159.954 kb on - strand, within HP15_163at 159.954 kb on - strand, within HP15_163at 159.954 kb on - strand, within HP15_163at 159.956 kb on + strand, within HP15_163at 159.958 kb on + strand, within HP15_163at 159.966 kb on - strand, within HP15_163at 159.966 kb on - strand, within HP15_163at 160.019 kb on - strand, within HP15_163at 160.027 kb on + strand, within HP15_163at 160.069 kb on - strand, within HP15_163at 160.138 kb on + strand, within HP15_163at 160.138 kb on + strand, within HP15_163at 160.146 kb on - strand, within HP15_163at 160.146 kb on - strand, within HP15_163at 160.151 kb on - strand, within HP15_163at 160.158 kb on + strand, within HP15_163at 160.158 kb on + strand, within HP15_163at 160.166 kb on - strand, within HP15_163at 160.256 kb on - strand, within HP15_163at 160.290 kb on - strand, within HP15_163at 160.361 kb on + strand, within HP15_163at 160.418 kb on - strand, within HP15_163at 160.442 kb on + strand, within HP15_163at 160.450 kb on - strand, within HP15_163at 160.450 kb on - strand, within HP15_163at 160.497 kb on + strand, within HP15_163at 160.503 kb on + strand, within HP15_163at 160.509 kb on + strand, within HP15_163at 160.571 kb on - strand, within HP15_163at 160.580 kb on + strand, within HP15_163at 160.642 kb on - strandat 160.752 kb on + strandat 160.797 kb on - strand, within HP15_164at 160.857 kb on + strand, within HP15_164at 160.871 kb on - strand, within HP15_164at 160.872 kb on - strand, within HP15_164at 160.972 kb on + strandat 160.980 kb on - strandat 160.980 kb on - strandat 160.980 kb on - strandat 161.004 kb on + strandat 161.004 kb on - strandat 161.038 kb on - strand, within HP15_165at 161.043 kb on + strand, within HP15_165at 161.108 kb on - strand, within HP15_165at 161.108 kb on - strand, within HP15_165at 161.110 kb on + strand, within HP15_165at 161.134 kb on - strandat 161.140 kb on + strandat 161.163 kb on - strandat 161.283 kb on + strandat 161.286 kb on - strandat 161.323 kb on + strand, within HP15_166at 161.373 kb on + strand, within HP15_166at 161.391 kb on + strand, within HP15_166at 161.407 kb on - strand, within HP15_166at 161.565 kb on + strand, within HP15_166at 161.565 kb on + strand, within HP15_166at 161.565 kb on + strand, within HP15_166at 161.565 kb on + strand, within HP15_166at 161.565 kb on + strand, within HP15_166at 161.573 kb on - strand, within HP15_166at 161.573 kb on - strand, within HP15_166at 161.573 kb on - strand, within HP15_166

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine as (N)
remove
158,815 + HP15_161 0.84 +0.4
158,815 + HP15_161 0.84 -0.7
158,818 - HP15_161 0.85 +0.6
158,873 + +1.6
158,972 + -1.0
159,035 - +3.1
159,037 + +0.2
159,040 - -0.2
159,066 + -1.0
159,074 - +2.0
159,119 - +2.0
159,129 - -0.7
159,185 - -0.0
159,214 + -0.6
159,217 - -0.9
159,222 - +1.5
159,260 + +0.1
159,310 + +0.3
159,361 + +0.5
159,393 + +0.9
159,411 - +1.0
159,459 - +2.9
159,543 + HP15_162 0.13 -0.1
159,586 + HP15_162 0.35 -0.5
159,594 - HP15_162 0.39 -0.5
159,713 + +0.6
159,753 + +0.1
159,777 - +0.9
159,817 - +1.7
159,954 - HP15_163 0.19 +0.7
159,954 - HP15_163 0.19 -0.5
159,954 - HP15_163 0.19 -1.1
159,956 + HP15_163 0.19 +0.2
159,958 + HP15_163 0.19 -0.7
159,966 - HP15_163 0.20 -0.1
159,966 - HP15_163 0.20 -1.1
160,019 - HP15_163 0.26 +1.9
160,027 + HP15_163 0.27 -0.8
160,069 - HP15_163 0.32 -0.7
160,138 + HP15_163 0.39 -0.6
160,138 + HP15_163 0.39 +2.5
160,146 - HP15_163 0.40 +2.1
160,146 - HP15_163 0.40 -1.0
160,151 - HP15_163 0.41 -0.3
160,158 + HP15_163 0.41 +1.7
160,158 + HP15_163 0.41 +0.3
160,166 - HP15_163 0.42 -0.7
160,256 - HP15_163 0.52 -1.6
160,290 - HP15_163 0.56 -0.1
160,361 + HP15_163 0.64 -1.1
160,418 - HP15_163 0.70 +2.0
160,442 + HP15_163 0.73 -2.2
160,450 - HP15_163 0.74 -1.8
160,450 - HP15_163 0.74 -0.6
160,497 + HP15_163 0.79 -0.4
160,503 + HP15_163 0.79 +0.0
160,509 + HP15_163 0.80 -0.6
160,571 - HP15_163 0.87 -1.0
160,580 + HP15_163 0.88 +3.1
160,642 - +2.2
160,752 + +2.0
160,797 - HP15_164 0.22 +1.6
160,857 + HP15_164 0.53 -0.7
160,871 - HP15_164 0.60 -0.0
160,872 - HP15_164 0.61 +1.8
160,972 + +2.9
160,980 - +0.7
160,980 - -1.2
160,980 - -0.5
161,004 + -1.3
161,004 - -0.4
161,038 - HP15_165 0.29 -0.6
161,043 + HP15_165 0.32 -0.3
161,108 - HP15_165 0.75 -0.8
161,108 - HP15_165 0.75 -0.5
161,110 + HP15_165 0.76 -1.1
161,134 - -0.3
161,140 + -0.3
161,163 - +0.2
161,283 + +1.7
161,286 - +1.0
161,323 + HP15_166 0.13 -0.7
161,373 + HP15_166 0.19 +0.6
161,391 + HP15_166 0.21 -0.5
161,407 - HP15_166 0.22 +1.6
161,565 + HP15_166 0.40 -0.8
161,565 + HP15_166 0.40 -0.2
161,565 + HP15_166 0.40 +1.4
161,565 + HP15_166 0.40 +1.2
161,565 + HP15_166 0.40 -0.5
161,573 - HP15_166 0.41 +1.7
161,573 - HP15_166 0.41 +0.3
161,573 - HP15_166 0.41 -1.3

Or see this region's nucleotide sequence