Experiment: D-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_tRNA30 and HP15_1555 are separated by 77 nucleotides HP15_1555 and HP15_1556 are separated by 28 nucleotides HP15_1556 and HP15_1557 overlap by 4 nucleotides HP15_1557 and HP15_1558 are separated by 85 nucleotides
HP15_tRNA30: HP15_tRNA30 - tRNA-Ser, at 1,636,739 to 1,636,829
_tRNA30
HP15_1555: HP15_1555 - protein containing DUF938, at 1,636,907 to 1,637,509
_1555
HP15_1556: HP15_1556 - conserved hypothetical protein, at 1,637,538 to 1,638,131
_1556
HP15_1557: HP15_1557 - acylphosphatase, at 1,638,128 to 1,638,403
_1557
HP15_1558: HP15_1558 - fructosamine kinase, at 1,638,489 to 1,639,262
_1558
Position (kb)
1637
1638
1639 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1636.887 kb on - strand at 1637.040 kb on - strand, within HP15_1555 at 1637.075 kb on + strand, within HP15_1555 at 1637.124 kb on + strand, within HP15_1555 at 1637.132 kb on - strand, within HP15_1555 at 1637.260 kb on - strand, within HP15_1555 at 1637.285 kb on - strand, within HP15_1555 at 1637.365 kb on - strand, within HP15_1555 at 1637.382 kb on - strand, within HP15_1555 at 1637.384 kb on + strand, within HP15_1555 at 1637.392 kb on - strand, within HP15_1555 at 1637.581 kb on - strand at 1637.609 kb on - strand, within HP15_1556 at 1637.715 kb on + strand, within HP15_1556 at 1637.733 kb on - strand, within HP15_1556 at 1637.806 kb on + strand, within HP15_1556 at 1637.812 kb on - strand, within HP15_1556 at 1637.887 kb on + strand, within HP15_1556 at 1637.911 kb on + strand, within HP15_1556 at 1637.916 kb on + strand, within HP15_1556 at 1637.944 kb on - strand, within HP15_1556 at 1638.050 kb on - strand, within HP15_1556 at 1638.050 kb on - strand, within HP15_1556 at 1638.052 kb on + strand, within HP15_1556 at 1638.106 kb on - strand at 1638.319 kb on - strand, within HP15_1557 at 1638.586 kb on + strand, within HP15_1558 at 1638.619 kb on + strand, within HP15_1558 at 1638.708 kb on - strand, within HP15_1558 at 1638.896 kb on - strand, within HP15_1558 at 1638.899 kb on + strand, within HP15_1558 at 1638.930 kb on - strand, within HP15_1558 at 1639.023 kb on + strand, within HP15_1558 at 1639.025 kb on + strand, within HP15_1558
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine as (N) remove 1,636,887 - -0.5 1,637,040 - HP15_1555 0.22 +1.4 1,637,075 + HP15_1555 0.28 -0.3 1,637,124 + HP15_1555 0.36 -1.1 1,637,132 - HP15_1555 0.37 +0.4 1,637,260 - HP15_1555 0.59 +0.0 1,637,285 - HP15_1555 0.63 +0.6 1,637,365 - HP15_1555 0.76 -0.4 1,637,382 - HP15_1555 0.79 -0.4 1,637,384 + HP15_1555 0.79 -0.3 1,637,392 - HP15_1555 0.80 +0.3 1,637,581 - -2.7 1,637,609 - HP15_1556 0.12 +0.5 1,637,715 + HP15_1556 0.30 +0.1 1,637,733 - HP15_1556 0.33 +1.2 1,637,806 + HP15_1556 0.45 +0.7 1,637,812 - HP15_1556 0.46 +2.1 1,637,887 + HP15_1556 0.59 +1.2 1,637,911 + HP15_1556 0.63 +1.9 1,637,916 + HP15_1556 0.64 -2.5 1,637,944 - HP15_1556 0.68 -2.4 1,638,050 - HP15_1556 0.86 +0.1 1,638,050 - HP15_1556 0.86 +0.1 1,638,052 + HP15_1556 0.87 +0.9 1,638,106 - -1.3 1,638,319 - HP15_1557 0.69 +1.1 1,638,586 + HP15_1558 0.13 +0.3 1,638,619 + HP15_1558 0.17 -0.6 1,638,708 - HP15_1558 0.28 -1.0 1,638,896 - HP15_1558 0.53 +4.1 1,638,899 + HP15_1558 0.53 +1.2 1,638,930 - HP15_1558 0.57 +1.3 1,639,023 + HP15_1558 0.69 -2.5 1,639,025 + HP15_1558 0.69 -0.5
Or see this region's nucleotide sequence