Strain Fitness in Marinobacter adhaerens HP15 around HP15_1556

Experiment: D-Alanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_tRNA30 and HP15_1555 are separated by 77 nucleotidesHP15_1555 and HP15_1556 are separated by 28 nucleotidesHP15_1556 and HP15_1557 overlap by 4 nucleotidesHP15_1557 and HP15_1558 are separated by 85 nucleotides HP15_tRNA30: HP15_tRNA30 - tRNA-Ser, at 1,636,739 to 1,636,829 _tRNA30 HP15_1555: HP15_1555 - protein containing DUF938, at 1,636,907 to 1,637,509 _1555 HP15_1556: HP15_1556 - conserved hypothetical protein, at 1,637,538 to 1,638,131 _1556 HP15_1557: HP15_1557 - acylphosphatase, at 1,638,128 to 1,638,403 _1557 HP15_1558: HP15_1558 - fructosamine kinase, at 1,638,489 to 1,639,262 _1558 Position (kb) 1637 1638 1639Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1636.887 kb on - strandat 1637.040 kb on - strand, within HP15_1555at 1637.075 kb on + strand, within HP15_1555at 1637.124 kb on + strand, within HP15_1555at 1637.132 kb on - strand, within HP15_1555at 1637.260 kb on - strand, within HP15_1555at 1637.285 kb on - strand, within HP15_1555at 1637.365 kb on - strand, within HP15_1555at 1637.382 kb on - strand, within HP15_1555at 1637.384 kb on + strand, within HP15_1555at 1637.392 kb on - strand, within HP15_1555at 1637.581 kb on - strandat 1637.609 kb on - strand, within HP15_1556at 1637.715 kb on + strand, within HP15_1556at 1637.733 kb on - strand, within HP15_1556at 1637.806 kb on + strand, within HP15_1556at 1637.812 kb on - strand, within HP15_1556at 1637.887 kb on + strand, within HP15_1556at 1637.911 kb on + strand, within HP15_1556at 1637.916 kb on + strand, within HP15_1556at 1637.944 kb on - strand, within HP15_1556at 1638.050 kb on - strand, within HP15_1556at 1638.050 kb on - strand, within HP15_1556at 1638.052 kb on + strand, within HP15_1556at 1638.106 kb on - strandat 1638.319 kb on - strand, within HP15_1557at 1638.586 kb on + strand, within HP15_1558at 1638.619 kb on + strand, within HP15_1558at 1638.708 kb on - strand, within HP15_1558at 1638.896 kb on - strand, within HP15_1558at 1638.899 kb on + strand, within HP15_1558at 1638.930 kb on - strand, within HP15_1558at 1639.023 kb on + strand, within HP15_1558at 1639.025 kb on + strand, within HP15_1558

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine as (N)
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1,636,887 - -0.5
1,637,040 - HP15_1555 0.22 +1.4
1,637,075 + HP15_1555 0.28 -0.3
1,637,124 + HP15_1555 0.36 -1.1
1,637,132 - HP15_1555 0.37 +0.4
1,637,260 - HP15_1555 0.59 +0.0
1,637,285 - HP15_1555 0.63 +0.6
1,637,365 - HP15_1555 0.76 -0.4
1,637,382 - HP15_1555 0.79 -0.4
1,637,384 + HP15_1555 0.79 -0.3
1,637,392 - HP15_1555 0.80 +0.3
1,637,581 - -2.7
1,637,609 - HP15_1556 0.12 +0.5
1,637,715 + HP15_1556 0.30 +0.1
1,637,733 - HP15_1556 0.33 +1.2
1,637,806 + HP15_1556 0.45 +0.7
1,637,812 - HP15_1556 0.46 +2.1
1,637,887 + HP15_1556 0.59 +1.2
1,637,911 + HP15_1556 0.63 +1.9
1,637,916 + HP15_1556 0.64 -2.5
1,637,944 - HP15_1556 0.68 -2.4
1,638,050 - HP15_1556 0.86 +0.1
1,638,050 - HP15_1556 0.86 +0.1
1,638,052 + HP15_1556 0.87 +0.9
1,638,106 - -1.3
1,638,319 - HP15_1557 0.69 +1.1
1,638,586 + HP15_1558 0.13 +0.3
1,638,619 + HP15_1558 0.17 -0.6
1,638,708 - HP15_1558 0.28 -1.0
1,638,896 - HP15_1558 0.53 +4.1
1,638,899 + HP15_1558 0.53 +1.2
1,638,930 - HP15_1558 0.57 +1.3
1,639,023 + HP15_1558 0.69 -2.5
1,639,025 + HP15_1558 0.69 -0.5

Or see this region's nucleotide sequence