Strain Fitness in Marinobacter adhaerens HP15 around HP15_155

Experiment: D-Alanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_154 and HP15_155 overlap by 4 nucleotidesHP15_155 and HP15_156 are separated by 49 nucleotidesHP15_156 and HP15_157 are separated by 389 nucleotides HP15_154: HP15_154 - membrane protein, at 154,654 to 154,956 _154 HP15_155: HP15_155 - conserved hypothetical protein, membrane, at 154,953 to 155,630 _155 HP15_156: HP15_156 - conserved hypothetical protein, at 155,680 to 155,997 _156 HP15_157: HP15_157 - conserved hypothetical protein, at 156,387 to 156,779 _157 Position (kb) 154 155 156Strain fitness (log2 ratio) -2 -1 0 1 2at 153.970 kb on + strandat 154.131 kb on - strandat 154.187 kb on + strandat 154.201 kb on - strandat 154.233 kb on - strandat 154.252 kb on - strandat 154.325 kb on + strandat 154.420 kb on - strandat 154.443 kb on + strandat 154.461 kb on - strandat 154.461 kb on - strandat 154.473 kb on - strandat 154.494 kb on - strandat 154.552 kb on + strandat 154.588 kb on - strandat 154.613 kb on - strandat 154.617 kb on + strandat 154.617 kb on + strandat 154.625 kb on - strandat 154.738 kb on + strand, within HP15_154at 154.746 kb on - strand, within HP15_154at 154.761 kb on - strand, within HP15_154at 154.761 kb on - strand, within HP15_154at 154.777 kb on + strand, within HP15_154at 154.824 kb on + strand, within HP15_154at 154.832 kb on - strand, within HP15_154at 154.861 kb on + strand, within HP15_154at 154.861 kb on + strand, within HP15_154at 154.902 kb on + strand, within HP15_154at 154.910 kb on - strand, within HP15_154at 154.979 kb on + strandat 154.989 kb on - strandat 155.001 kb on + strandat 155.009 kb on + strandat 155.009 kb on + strandat 155.023 kb on - strand, within HP15_155at 155.035 kb on + strand, within HP15_155at 155.134 kb on - strand, within HP15_155at 155.147 kb on - strand, within HP15_155at 155.163 kb on + strand, within HP15_155at 155.322 kb on + strand, within HP15_155at 155.354 kb on - strand, within HP15_155at 155.363 kb on - strand, within HP15_155at 155.380 kb on - strand, within HP15_155at 155.519 kb on + strand, within HP15_155at 155.519 kb on + strand, within HP15_155at 155.519 kb on + strand, within HP15_155at 155.534 kb on - strand, within HP15_155at 155.538 kb on + strand, within HP15_155at 155.546 kb on - strand, within HP15_155at 155.546 kb on - strand, within HP15_155at 155.571 kb on + strandat 155.571 kb on + strandat 155.579 kb on - strandat 155.598 kb on - strandat 155.598 kb on - strandat 155.630 kb on + strandat 155.639 kb on + strandat 155.639 kb on + strandat 155.649 kb on - strandat 155.683 kb on - strandat 155.688 kb on + strandat 155.698 kb on + strandat 155.788 kb on + strand, within HP15_156at 155.882 kb on + strand, within HP15_156at 155.884 kb on - strand, within HP15_156at 155.884 kb on - strand, within HP15_156at 155.999 kb on - strandat 155.999 kb on - strandat 156.004 kb on - strandat 156.009 kb on - strandat 156.022 kb on - strandat 156.048 kb on + strandat 156.156 kb on + strandat 156.156 kb on + strandat 156.187 kb on + strandat 156.280 kb on + strandat 156.280 kb on + strandat 156.288 kb on - strandat 156.316 kb on - strandat 156.343 kb on - strandat 156.381 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine as (N)
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153,970 + -0.1
154,131 - +2.3
154,187 + -0.2
154,201 - -1.2
154,233 - -2.3
154,252 - +1.8
154,325 + -2.0
154,420 - -1.4
154,443 + +2.3
154,461 - -0.0
154,461 - -0.2
154,473 - -0.1
154,494 - -0.2
154,552 + -0.7
154,588 - -0.7
154,613 - +1.6
154,617 + -0.4
154,617 + -0.7
154,625 - -0.4
154,738 + HP15_154 0.28 +1.4
154,746 - HP15_154 0.30 +1.1
154,761 - HP15_154 0.35 -0.8
154,761 - HP15_154 0.35 -0.9
154,777 + HP15_154 0.41 -0.8
154,824 + HP15_154 0.56 +1.6
154,832 - HP15_154 0.59 +1.2
154,861 + HP15_154 0.68 -0.3
154,861 + HP15_154 0.68 -0.1
154,902 + HP15_154 0.82 -0.9
154,910 - HP15_154 0.84 -0.1
154,979 + -2.2
154,989 - -0.6
155,001 + +1.8
155,009 + -0.6
155,009 + -0.8
155,023 - HP15_155 0.10 -0.9
155,035 + HP15_155 0.12 +1.8
155,134 - HP15_155 0.27 -0.6
155,147 - HP15_155 0.29 -1.3
155,163 + HP15_155 0.31 -1.0
155,322 + HP15_155 0.54 -0.7
155,354 - HP15_155 0.59 +1.4
155,363 - HP15_155 0.60 -0.7
155,380 - HP15_155 0.63 +0.4
155,519 + HP15_155 0.83 -0.8
155,519 + HP15_155 0.83 +0.1
155,519 + HP15_155 0.83 +1.2
155,534 - HP15_155 0.86 +0.5
155,538 + HP15_155 0.86 -0.5
155,546 - HP15_155 0.87 -0.7
155,546 - HP15_155 0.87 -0.6
155,571 + +1.7
155,571 + -0.7
155,579 - +1.7
155,598 - +1.7
155,598 - +0.8
155,630 + +0.8
155,639 + +1.7
155,639 + -0.5
155,649 - +2.4
155,683 - -0.7
155,688 + +0.1
155,698 + -0.9
155,788 + HP15_156 0.34 -0.8
155,882 + HP15_156 0.64 -1.3
155,884 - HP15_156 0.64 -0.8
155,884 - HP15_156 0.64 +1.3
155,999 - +1.7
155,999 - -0.6
156,004 - +1.8
156,009 - -1.6
156,022 - +0.2
156,048 + +0.7
156,156 + -0.5
156,156 + +2.4
156,187 + +0.1
156,280 + -0.3
156,280 + -0.6
156,288 - +0.3
156,316 - +1.5
156,343 - -1.0
156,381 + -0.2

Or see this region's nucleotide sequence