Strain Fitness in Marinobacter adhaerens HP15 around HP15_152

Experiment: D-Alanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_151 and HP15_152 are separated by 7 nucleotidesHP15_152 and HP15_153 are separated by 1 nucleotides HP15_151: HP15_151 - conserved hypothetical protein, membrane, at 151,796 to 152,884 _151 HP15_152: HP15_152 - conserved hypothetical protein, at 152,892 to 153,125 _152 HP15_153: HP15_153 - DSBA oxidoreductase, at 153,127 to 153,918 _153 Position (kb) 152 153 154Strain fitness (log2 ratio) -2 -1 0 1 2 3at 151.905 kb on - strand, within HP15_151at 151.912 kb on + strand, within HP15_151at 151.920 kb on - strand, within HP15_151at 152.032 kb on + strand, within HP15_151at 152.104 kb on - strand, within HP15_151at 152.221 kb on + strand, within HP15_151at 152.225 kb on + strand, within HP15_151at 152.251 kb on + strand, within HP15_151at 152.259 kb on - strand, within HP15_151at 152.281 kb on - strand, within HP15_151at 152.311 kb on + strand, within HP15_151at 152.311 kb on + strand, within HP15_151at 152.319 kb on - strand, within HP15_151at 152.319 kb on - strand, within HP15_151at 152.319 kb on - strand, within HP15_151at 152.437 kb on + strand, within HP15_151at 152.452 kb on + strand, within HP15_151at 152.452 kb on + strand, within HP15_151at 152.570 kb on + strand, within HP15_151at 152.707 kb on + strand, within HP15_151at 152.724 kb on + strand, within HP15_151at 152.778 kb on - strandat 152.868 kb on - strandat 152.947 kb on - strand, within HP15_152at 152.957 kb on - strand, within HP15_152at 152.959 kb on + strand, within HP15_152at 152.986 kb on - strand, within HP15_152at 153.075 kb on - strand, within HP15_152at 153.152 kb on - strandat 153.173 kb on - strandat 153.199 kb on - strandat 153.248 kb on - strand, within HP15_153at 153.286 kb on + strand, within HP15_153at 153.316 kb on - strand, within HP15_153at 153.388 kb on - strand, within HP15_153at 153.464 kb on + strand, within HP15_153at 153.464 kb on + strand, within HP15_153at 153.469 kb on + strand, within HP15_153at 153.472 kb on - strand, within HP15_153at 153.472 kb on - strand, within HP15_153at 153.472 kb on - strand, within HP15_153at 153.512 kb on + strand, within HP15_153at 153.640 kb on + strand, within HP15_153at 153.640 kb on + strand, within HP15_153at 153.648 kb on - strand, within HP15_153at 153.724 kb on + strand, within HP15_153at 153.732 kb on - strand, within HP15_153at 153.732 kb on - strand, within HP15_153at 153.827 kb on + strand, within HP15_153at 153.942 kb on + strandat 153.950 kb on - strandat 153.950 kb on - strandat 153.970 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine as (N)
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151,905 - HP15_151 0.10 +1.8
151,912 + HP15_151 0.11 +1.3
151,920 - HP15_151 0.11 +1.8
152,032 + HP15_151 0.22 -1.0
152,104 - HP15_151 0.28 -0.2
152,221 + HP15_151 0.39 -0.6
152,225 + HP15_151 0.39 -0.7
152,251 + HP15_151 0.42 +0.9
152,259 - HP15_151 0.43 +1.6
152,281 - HP15_151 0.45 -0.8
152,311 + HP15_151 0.47 -1.0
152,311 + HP15_151 0.47 -0.5
152,319 - HP15_151 0.48 -1.5
152,319 - HP15_151 0.48 -0.5
152,319 - HP15_151 0.48 -0.4
152,437 + HP15_151 0.59 -0.9
152,452 + HP15_151 0.60 -0.5
152,452 + HP15_151 0.60 -0.4
152,570 + HP15_151 0.71 -0.8
152,707 + HP15_151 0.84 +1.3
152,724 + HP15_151 0.85 +0.3
152,778 - +0.3
152,868 - +0.7
152,947 - HP15_152 0.24 -0.8
152,957 - HP15_152 0.28 -1.9
152,959 + HP15_152 0.29 -1.0
152,986 - HP15_152 0.40 -0.5
153,075 - HP15_152 0.78 +0.0
153,152 - +1.0
153,173 - +1.4
153,199 - +0.2
153,248 - HP15_153 0.15 +1.7
153,286 + HP15_153 0.20 -0.6
153,316 - HP15_153 0.24 +0.6
153,388 - HP15_153 0.33 +1.7
153,464 + HP15_153 0.43 +0.3
153,464 + HP15_153 0.43 +1.5
153,469 + HP15_153 0.43 -0.4
153,472 - HP15_153 0.44 +2.1
153,472 - HP15_153 0.44 +2.6
153,472 - HP15_153 0.44 -0.6
153,512 + HP15_153 0.49 +0.7
153,640 + HP15_153 0.65 +1.8
153,640 + HP15_153 0.65 +3.6
153,648 - HP15_153 0.66 -0.5
153,724 + HP15_153 0.75 +1.5
153,732 - HP15_153 0.76 +1.7
153,732 - HP15_153 0.76 +1.7
153,827 + HP15_153 0.88 +2.0
153,942 + -0.8
153,950 - +0.6
153,950 - -0.2
153,970 + -0.1

Or see this region's nucleotide sequence