Strain Fitness in Marinobacter adhaerens HP15 around HP15_1248

Experiment: D-Alanine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_rRNA8 and HP15_rRNA9 are separated by 101 nucleotidesHP15_rRNA9 and HP15_1247 are separated by 66 nucleotidesHP15_1247 and HP15_1248 overlap by 4 nucleotidesHP15_1248 and HP15_1249 overlap by 4 nucleotides HP15_rRNA8: HP15_rRNA8 - 23S ribosomal RNA, at 1,301,060 to 1,303,951 _rRNA8 HP15_rRNA9: HP15_rRNA9 - 5S ribosomal RNA, at 1,304,053 to 1,304,166 _rRNA9 HP15_1247: HP15_1247 - signal transduction histidine kinase, at 1,304,233 to 1,304,913 _1247 HP15_1248: HP15_1248 - response regulator/TPR domain protein, at 1,304,910 to 1,306,547 _1248 HP15_1249: HP15_1249 - two-component system sensor protein, at 1,306,544 to 1,310,062 _1249 Position (kb) 1304 1305 1306 1307Strain fitness (log2 ratio) -2 -1 0 1 2at 1304.231 kb on + strandat 1304.442 kb on + strand, within HP15_1247at 1304.519 kb on - strand, within HP15_1247at 1304.528 kb on + strand, within HP15_1247at 1304.627 kb on - strand, within HP15_1247at 1304.661 kb on + strand, within HP15_1247at 1304.828 kb on + strand, within HP15_1247at 1305.037 kb on + strandat 1305.065 kb on - strandat 1305.172 kb on - strand, within HP15_1248at 1305.283 kb on - strand, within HP15_1248at 1305.317 kb on - strand, within HP15_1248at 1305.340 kb on - strand, within HP15_1248at 1305.404 kb on - strand, within HP15_1248at 1305.435 kb on - strand, within HP15_1248at 1305.476 kb on + strand, within HP15_1248at 1305.596 kb on + strand, within HP15_1248at 1305.599 kb on - strand, within HP15_1248at 1305.692 kb on + strand, within HP15_1248at 1305.821 kb on + strand, within HP15_1248at 1305.871 kb on - strand, within HP15_1248at 1306.062 kb on + strand, within HP15_1248at 1306.185 kb on - strand, within HP15_1248at 1306.394 kb on + strandat 1306.531 kb on + strandat 1306.768 kb on + strandat 1306.922 kb on + strand, within HP15_1249at 1306.965 kb on + strand, within HP15_1249

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine as (N)
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1,304,231 + -0.0
1,304,442 + HP15_1247 0.31 -1.8
1,304,519 - HP15_1247 0.42 -0.9
1,304,528 + HP15_1247 0.43 +1.5
1,304,627 - HP15_1247 0.58 -0.2
1,304,661 + HP15_1247 0.63 -1.8
1,304,828 + HP15_1247 0.87 +1.5
1,305,037 + -0.4
1,305,065 - +1.7
1,305,172 - HP15_1248 0.16 +2.0
1,305,283 - HP15_1248 0.23 -0.3
1,305,317 - HP15_1248 0.25 +2.5
1,305,340 - HP15_1248 0.26 +1.1
1,305,404 - HP15_1248 0.30 +2.2
1,305,435 - HP15_1248 0.32 -0.1
1,305,476 + HP15_1248 0.35 +2.2
1,305,596 + HP15_1248 0.42 +2.0
1,305,599 - HP15_1248 0.42 -1.2
1,305,692 + HP15_1248 0.48 -0.8
1,305,821 + HP15_1248 0.56 +0.8
1,305,871 - HP15_1248 0.59 +2.0
1,306,062 + HP15_1248 0.70 +0.6
1,306,185 - HP15_1248 0.78 -2.0
1,306,394 + -1.0
1,306,531 + -0.4
1,306,768 + -0.5
1,306,922 + HP15_1249 0.11 +1.2
1,306,965 + HP15_1249 0.12 +0.8

Or see this region's nucleotide sequence