Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3123

Experiment: methionine 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_3121 and DvMF_3122 overlap by 1 nucleotidesDvMF_3122 and DvMF_3123 are separated by 60 nucleotidesDvMF_3123 and DvMF_3124 are separated by 686 nucleotides DvMF_3121: DvMF_3121 - putative lipoprotein (RefSeq), at 3,941,007 to 3,941,678 _3121 DvMF_3122: DvMF_3122 - Imidazoleglycerol-phosphate dehydratase (RefSeq), at 3,941,678 to 3,942,268 _3122 DvMF_3123: DvMF_3123 - Sec-independent protein translocase, TatC subunit (RefSeq), at 3,942,329 to 3,943,123 _3123 DvMF_3124: DvMF_3124 - twin-arginine translocation protein, TatB subunit (RefSeq), at 3,943,810 to 3,944,100 _3124 Position (kb) 3942 3943 3944Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3941.609 kb on + strand, within DvMF_3121at 3941.702 kb on + strandat 3941.748 kb on - strand, within DvMF_3122at 3941.880 kb on + strand, within DvMF_3122at 3942.106 kb on + strand, within DvMF_3122at 3942.350 kb on - strandat 3943.268 kb on - strandat 3943.879 kb on - strand, within DvMF_3124

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction methionine 1 mM
remove
3,941,609 + DvMF_3121 0.90 -2.8
3,941,702 + -2.9
3,941,748 - DvMF_3122 0.12 -3.2
3,941,880 + DvMF_3122 0.34 -4.6
3,942,106 + DvMF_3122 0.72 -4.2
3,942,350 - -0.1
3,943,268 - -1.5
3,943,879 - DvMF_3124 0.24 -1.6

Or see this region's nucleotide sequence