Experiment: methionine 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3120 and DvMF_3121 overlap by 4 nucleotides DvMF_3121 and DvMF_3122 overlap by 1 nucleotides DvMF_3122 and DvMF_3123 are separated by 60 nucleotides
DvMF_3120: DvMF_3120 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (RefSeq), at 3,940,279 to 3,941,010
_3120
DvMF_3121: DvMF_3121 - putative lipoprotein (RefSeq), at 3,941,007 to 3,941,678
_3121
DvMF_3122: DvMF_3122 - Imidazoleglycerol-phosphate dehydratase (RefSeq), at 3,941,678 to 3,942,268
_3122
DvMF_3123: DvMF_3123 - Sec-independent protein translocase, TatC subunit (RefSeq), at 3,942,329 to 3,943,123
_3123
Position (kb) 3941
3942
3943 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 3941.044 kb on + strand at 3941.079 kb on - strand, within DvMF_3121 at 3941.293 kb on + strand, within DvMF_3121 at 3941.311 kb on - strand, within DvMF_3121 at 3941.609 kb on + strand, within DvMF_3121 at 3941.702 kb on + strand at 3941.748 kb on - strand, within DvMF_3122 at 3941.880 kb on + strand, within DvMF_3122 at 3942.106 kb on + strand, within DvMF_3122 at 3942.350 kb on - strand at 3943.268 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methionine 1 mM remove 3,941,044 + -3.4 3,941,079 - DvMF_3121 0.11 -4.1 3,941,293 + DvMF_3121 0.43 -3.7 3,941,311 - DvMF_3121 0.45 -4.3 3,941,609 + DvMF_3121 0.90 -2.8 3,941,702 + -2.9 3,941,748 - DvMF_3122 0.12 -3.2 3,941,880 + DvMF_3122 0.34 -4.6 3,942,106 + DvMF_3122 0.72 -4.2 3,942,350 - -0.1 3,943,268 - -1.5
Or see this region's nucleotide sequence