Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2872

Experiment: methionine 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2871 and DvMF_R0075 are separated by 518 nucleotidesDvMF_R0075 and argJ are separated by 252 nucleotidesargJ and DvMF_2873 are separated by 336 nucleotides DvMF_2871: DvMF_2871 - MotA/TolQ/ExbB proton channel (RefSeq), at 3,623,621 to 3,624,376 _2871 DvMF_R0075: DvMF_R0075 - tRNA-Ser (RefSeq), at 3,624,895 to 3,624,987 _R0075 DvMF_2872: argJ - bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein (RefSeq), at 3,625,240 to 3,626,478 argJ DvMF_2873: DvMF_2873 - preprotein translocase subunit SecA (RefSeq), at 3,626,815 to 3,629,349 _2873 Position (kb) 3625 3626 3627Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3624.749 kb on + strandat 3624.749 kb on + strandat 3624.803 kb on + strandat 3625.200 kb on - strandat 3625.307 kb on - strandat 3625.372 kb on - strand, within argJat 3625.372 kb on - strand, within argJat 3625.372 kb on - strand, within argJat 3625.406 kb on + strand, within argJat 3625.414 kb on - strand, within argJat 3625.907 kb on + strand, within argJat 3626.116 kb on - strand, within argJat 3626.241 kb on - strand, within argJat 3626.808 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methionine 1 mM
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3,624,749 + -0.4
3,624,749 + -0.1
3,624,803 + -0.9
3,625,200 - -0.4
3,625,307 - -4.2
3,625,372 - argJ DvMF_2872 0.11 -4.6
3,625,372 - argJ DvMF_2872 0.11 -6.2
3,625,372 - argJ DvMF_2872 0.11 -4.3
3,625,406 + argJ DvMF_2872 0.13 -5.9
3,625,414 - argJ DvMF_2872 0.14 -5.1
3,625,907 + argJ DvMF_2872 0.54 -3.8
3,626,116 - argJ DvMF_2872 0.71 -5.6
3,626,241 - argJ DvMF_2872 0.81 -3.4
3,626,808 - -0.6

Or see this region's nucleotide sequence