Experiment: methionine 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2779 and DvMF_2780 are separated by 504 nucleotides DvMF_2780 and DvMF_2781 are separated by 208 nucleotides DvMF_2781 and DvMF_2782 overlap by 4 nucleotides
DvMF_2779: DvMF_2779 - PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq), at 3,515,359 to 3,517,572
_2779
DvMF_2780: DvMF_2780 - ABC transporter, periplasmic substrate-binding protein (RefSeq), at 3,518,077 to 3,518,898
_2780
DvMF_2781: DvMF_2781 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,519,107 to 3,519,802
_2781
DvMF_2782: DvMF_2782 - ABC transporter related (RefSeq), at 3,519,799 to 3,520,653
_2782
Position (kb)
3518
3519 Strain fitness (log2 ratio)
-1
0
1 at 3517.172 kb on - strand, within DvMF_2779 at 3517.825 kb on + strand at 3517.923 kb on + strand at 3518.130 kb on + strand at 3518.438 kb on - strand, within DvMF_2780 at 3518.559 kb on - strand, within DvMF_2780 at 3518.616 kb on - strand, within DvMF_2780 at 3518.633 kb on + strand, within DvMF_2780 at 3518.739 kb on + strand, within DvMF_2780 at 3519.192 kb on + strand, within DvMF_2781 at 3519.219 kb on - strand, within DvMF_2781 at 3519.392 kb on - strand, within DvMF_2781 at 3519.498 kb on + strand, within DvMF_2781 at 3519.710 kb on + strand, within DvMF_2781 at 3519.813 kb on + strand at 3519.826 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction methionine 1 mM remove 3,517,172 - DvMF_2779 0.82 -1.1 3,517,825 + -0.6 3,517,923 + -0.2 3,518,130 + -0.9 3,518,438 - DvMF_2780 0.44 -0.7 3,518,559 - DvMF_2780 0.59 -0.9 3,518,616 - DvMF_2780 0.66 -0.2 3,518,633 + DvMF_2780 0.68 -0.2 3,518,739 + DvMF_2780 0.81 -0.2 3,519,192 + DvMF_2781 0.12 -0.4 3,519,219 - DvMF_2781 0.16 -0.6 3,519,392 - DvMF_2781 0.41 +0.2 3,519,498 + DvMF_2781 0.56 -0.3 3,519,710 + DvMF_2781 0.87 -0.4 3,519,813 + -0.4 3,519,826 + -0.3
Or see this region's nucleotide sequence