Experiment: methionine 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2156 and DvMF_2157 overlap by 4 nucleotides DvMF_2157 and DvMF_2158 are separated by 136 nucleotides DvMF_2158 and DvMF_2159 are separated by 77 nucleotides
DvMF_2156: DvMF_2156 - ABC transporter related (RefSeq), at 2,687,153 to 2,690,473
_2156
DvMF_2157: DvMF_2157 - secretion protein HlyD family protein (RefSeq), at 2,690,470 to 2,691,543
_2157
DvMF_2158: DvMF_2158 - transcriptional regulator, TetR family (RefSeq), at 2,691,680 to 2,692,414
_2158
DvMF_2159: DvMF_2159 - RND efflux system, outer membrane lipoprotein, NodT family (RefSeq), at 2,692,492 to 2,694,081
_2159
Position (kb)
2690
2691
2692 Strain fitness (log2 ratio)
-1
0
1 at 2689.641 kb on - strand, within DvMF_2156 at 2689.720 kb on - strand, within DvMF_2156 at 2689.874 kb on - strand, within DvMF_2156 at 2690.073 kb on - strand, within DvMF_2156 at 2690.073 kb on - strand, within DvMF_2156 at 2690.223 kb on + strand at 2690.231 kb on - strand at 2690.271 kb on + strand at 2690.320 kb on - strand at 2690.457 kb on + strand at 2690.480 kb on + strand at 2690.488 kb on - strand at 2690.529 kb on - strand at 2690.579 kb on - strand, within DvMF_2157 at 2691.043 kb on + strand, within DvMF_2157 at 2691.046 kb on - strand, within DvMF_2157 at 2691.051 kb on - strand, within DvMF_2157 at 2691.859 kb on + strand, within DvMF_2158 at 2691.867 kb on - strand, within DvMF_2158 at 2691.867 kb on - strand, within DvMF_2158 at 2691.873 kb on - strand, within DvMF_2158 at 2692.290 kb on + strand, within DvMF_2158 at 2692.333 kb on + strand, within DvMF_2158 at 2692.540 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methionine 1 mM remove 2,689,641 - DvMF_2156 0.75 -0.6 2,689,720 - DvMF_2156 0.77 -0.5 2,689,874 - DvMF_2156 0.82 -0.9 2,690,073 - DvMF_2156 0.88 -0.2 2,690,073 - DvMF_2156 0.88 -0.8 2,690,223 + -1.3 2,690,231 - -0.8 2,690,271 + -0.8 2,690,320 - -0.7 2,690,457 + -0.5 2,690,480 + -0.8 2,690,488 - -0.5 2,690,529 - -0.9 2,690,579 - DvMF_2157 0.10 -0.7 2,691,043 + DvMF_2157 0.53 -1.0 2,691,046 - DvMF_2157 0.54 -0.8 2,691,051 - DvMF_2157 0.54 -0.2 2,691,859 + DvMF_2158 0.24 +1.1 2,691,867 - DvMF_2158 0.25 +0.7 2,691,867 - DvMF_2158 0.25 +0.6 2,691,873 - DvMF_2158 0.26 +0.4 2,692,290 + DvMF_2158 0.83 +0.8 2,692,333 + DvMF_2158 0.89 -0.4 2,692,540 - -0.4
Or see this region's nucleotide sequence