Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2077

Experiment: methionine 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2077 and DvMF_2078 are separated by 301 nucleotides DvMF_2077: DvMF_2077 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 2,580,554 to 2,582,362 _2077 DvMF_2078: DvMF_2078 - peptidyl-prolyl cis-trans isomerase cyclophilin type (RefSeq), at 2,582,664 to 2,583,170 _2078 Position (kb) 2580 2581 2582 2583Strain fitness (log2 ratio) -1 0 1at 2579.652 kb on + strandat 2579.975 kb on + strandat 2580.016 kb on - strandat 2580.061 kb on - strandat 2580.066 kb on - strandat 2580.351 kb on + strandat 2580.485 kb on + strandat 2580.505 kb on - strandat 2580.654 kb on - strandat 2580.830 kb on + strand, within DvMF_2077at 2580.831 kb on + strand, within DvMF_2077at 2581.069 kb on - strand, within DvMF_2077at 2581.113 kb on - strand, within DvMF_2077at 2581.148 kb on + strand, within DvMF_2077at 2581.257 kb on + strand, within DvMF_2077at 2581.427 kb on - strand, within DvMF_2077at 2581.466 kb on + strand, within DvMF_2077at 2581.479 kb on + strand, within DvMF_2077at 2581.581 kb on - strand, within DvMF_2077at 2581.607 kb on + strand, within DvMF_2077at 2581.615 kb on + strand, within DvMF_2077at 2581.615 kb on - strand, within DvMF_2077at 2581.716 kb on + strand, within DvMF_2077at 2581.777 kb on + strand, within DvMF_2077at 2581.809 kb on + strand, within DvMF_2077at 2581.861 kb on + strand, within DvMF_2077at 2581.905 kb on - strand, within DvMF_2077at 2582.033 kb on - strand, within DvMF_2077at 2582.383 kb on + strandat 2582.457 kb on - strandat 2582.669 kb on - strandat 2582.741 kb on - strand, within DvMF_2078at 2583.033 kb on - strand, within DvMF_2078at 2583.068 kb on - strand, within DvMF_2078at 2583.134 kb on - strandat 2583.136 kb on + strandat 2583.326 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methionine 1 mM
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2,579,652 + -0.4
2,579,975 + -0.5
2,580,016 - -0.4
2,580,061 - -0.1
2,580,066 - -0.1
2,580,351 + -0.6
2,580,485 + -0.4
2,580,505 - +0.1
2,580,654 - -0.4
2,580,830 + DvMF_2077 0.15 -0.4
2,580,831 + DvMF_2077 0.15 +0.2
2,581,069 - DvMF_2077 0.28 -0.4
2,581,113 - DvMF_2077 0.31 +0.4
2,581,148 + DvMF_2077 0.33 -0.1
2,581,257 + DvMF_2077 0.39 -0.5
2,581,427 - DvMF_2077 0.48 -0.6
2,581,466 + DvMF_2077 0.50 -0.7
2,581,479 + DvMF_2077 0.51 +0.1
2,581,581 - DvMF_2077 0.57 -0.4
2,581,607 + DvMF_2077 0.58 -0.2
2,581,615 + DvMF_2077 0.59 -0.1
2,581,615 - DvMF_2077 0.59 -0.5
2,581,716 + DvMF_2077 0.64 -0.0
2,581,777 + DvMF_2077 0.68 -0.0
2,581,809 + DvMF_2077 0.69 -0.3
2,581,861 + DvMF_2077 0.72 -0.3
2,581,905 - DvMF_2077 0.75 -0.5
2,582,033 - DvMF_2077 0.82 -0.4
2,582,383 + +0.0
2,582,457 - -0.5
2,582,669 - +0.9
2,582,741 - DvMF_2078 0.15 -0.0
2,583,033 - DvMF_2078 0.73 -0.4
2,583,068 - DvMF_2078 0.80 +0.1
2,583,134 - -0.9
2,583,136 + -0.3
2,583,326 + -0.6

Or see this region's nucleotide sequence