Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1687

Experiment: methionine 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1685 and DvMF_1686 are separated by 157 nucleotidesDvMF_1686 and DvMF_1687 are separated by 341 nucleotidesDvMF_1687 and DvMF_R0048 are separated by 10 nucleotidesDvMF_R0048 and DvMF_1688 are separated by 328 nucleotides DvMF_1685: DvMF_1685 - hypothetical protein (RefSeq), at 2,053,441 to 2,053,764 _1685 DvMF_1686: DvMF_1686 - hypothetical protein (RefSeq), at 2,053,922 to 2,054,101 _1686 DvMF_1687: DvMF_1687 - integrase family protein (RefSeq), at 2,054,443 to 2,055,510 _1687 DvMF_R0048: DvMF_R0048 - tRNA-Val (RefSeq), at 2,055,521 to 2,055,596 _R0048 DvMF_1688: DvMF_1688 - hypothetical protein (RefSeq), at 2,055,925 to 2,057,079 _1688 Position (kb) 2054 2055 2056Strain fitness (log2 ratio) -1 0 1at 2053.578 kb on + strand, within DvMF_1685at 2053.719 kb on + strand, within DvMF_1685at 2053.727 kb on - strand, within DvMF_1685at 2053.737 kb on - strandat 2053.918 kb on - strandat 2053.957 kb on + strand, within DvMF_1686at 2053.975 kb on - strand, within DvMF_1686at 2054.261 kb on - strandat 2054.264 kb on + strandat 2054.375 kb on + strandat 2054.425 kb on + strandat 2054.427 kb on + strandat 2054.534 kb on - strandat 2054.537 kb on - strandat 2054.591 kb on - strand, within DvMF_1687at 2054.714 kb on + strand, within DvMF_1687at 2054.767 kb on + strand, within DvMF_1687at 2054.790 kb on + strand, within DvMF_1687at 2054.888 kb on + strand, within DvMF_1687at 2054.961 kb on - strand, within DvMF_1687at 2055.001 kb on + strand, within DvMF_1687at 2055.006 kb on + strand, within DvMF_1687at 2055.128 kb on - strand, within DvMF_1687at 2055.137 kb on + strand, within DvMF_1687at 2055.272 kb on - strand, within DvMF_1687at 2055.376 kb on + strand, within DvMF_1687at 2055.376 kb on + strand, within DvMF_1687at 2055.413 kb on + strandat 2055.523 kb on - strandat 2055.706 kb on + strandat 2055.714 kb on - strandat 2055.773 kb on + strandat 2055.906 kb on - strandat 2056.477 kb on - strand, within DvMF_1688at 2056.500 kb on - strand, within DvMF_1688

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Per-strain Table

Position Strand Gene LocusTag Fraction methionine 1 mM
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2,053,578 + DvMF_1685 0.42 -0.8
2,053,719 + DvMF_1685 0.86 -0.4
2,053,727 - DvMF_1685 0.88 -0.6
2,053,737 - +0.1
2,053,918 - -0.4
2,053,957 + DvMF_1686 0.19 -0.6
2,053,975 - DvMF_1686 0.29 -0.5
2,054,261 - -0.3
2,054,264 + -0.3
2,054,375 + -0.1
2,054,425 + -0.2
2,054,427 + -0.6
2,054,534 - -0.1
2,054,537 - -0.6
2,054,591 - DvMF_1687 0.14 -0.3
2,054,714 + DvMF_1687 0.25 -0.7
2,054,767 + DvMF_1687 0.30 -0.8
2,054,790 + DvMF_1687 0.32 -0.4
2,054,888 + DvMF_1687 0.42 -0.4
2,054,961 - DvMF_1687 0.49 -0.6
2,055,001 + DvMF_1687 0.52 -0.5
2,055,006 + DvMF_1687 0.53 +0.2
2,055,128 - DvMF_1687 0.64 -0.6
2,055,137 + DvMF_1687 0.65 -0.6
2,055,272 - DvMF_1687 0.78 -0.6
2,055,376 + DvMF_1687 0.87 -0.6
2,055,376 + DvMF_1687 0.87 -0.4
2,055,413 + -0.2
2,055,523 - -0.3
2,055,706 + -0.3
2,055,714 - -0.2
2,055,773 + -0.4
2,055,906 - -0.1
2,056,477 - DvMF_1688 0.48 +0.7
2,056,500 - DvMF_1688 0.50 -0.6

Or see this region's nucleotide sequence