Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1685

Experiment: methionine 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1683 and DvMF_1684 are separated by 16 nucleotidesDvMF_1684 and DvMF_1685 are separated by 29 nucleotidesDvMF_1685 and DvMF_1686 are separated by 157 nucleotidesDvMF_1686 and DvMF_1687 are separated by 341 nucleotides DvMF_1683: DvMF_1683 - protein of unknown function DUF1351 (RefSeq), at 2,051,587 to 2,052,486 _1683 DvMF_1684: DvMF_1684 - hypothetical protein (RefSeq), at 2,052,503 to 2,053,411 _1684 DvMF_1685: DvMF_1685 - hypothetical protein (RefSeq), at 2,053,441 to 2,053,764 _1685 DvMF_1686: DvMF_1686 - hypothetical protein (RefSeq), at 2,053,922 to 2,054,101 _1686 DvMF_1687: DvMF_1687 - integrase family protein (RefSeq), at 2,054,443 to 2,055,510 _1687 Position (kb) 2053 2054Strain fitness (log2 ratio) -1 0 1at 2052.728 kb on + strand, within DvMF_1684at 2053.030 kb on + strand, within DvMF_1684at 2053.030 kb on + strand, within DvMF_1684at 2053.030 kb on + strand, within DvMF_1684at 2053.030 kb on + strand, within DvMF_1684at 2053.030 kb on + strand, within DvMF_1684at 2053.038 kb on - strand, within DvMF_1684at 2053.038 kb on - strand, within DvMF_1684at 2053.419 kb on + strandat 2053.419 kb on + strandat 2053.427 kb on - strandat 2053.427 kb on - strandat 2053.578 kb on + strand, within DvMF_1685at 2053.719 kb on + strand, within DvMF_1685at 2053.727 kb on - strand, within DvMF_1685at 2053.737 kb on - strandat 2053.918 kb on - strandat 2053.957 kb on + strand, within DvMF_1686at 2053.975 kb on - strand, within DvMF_1686at 2054.261 kb on - strandat 2054.264 kb on + strandat 2054.375 kb on + strandat 2054.425 kb on + strandat 2054.427 kb on + strandat 2054.534 kb on - strandat 2054.537 kb on - strandat 2054.591 kb on - strand, within DvMF_1687at 2054.714 kb on + strand, within DvMF_1687

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction methionine 1 mM
remove
2,052,728 + DvMF_1684 0.25 -0.2
2,053,030 + DvMF_1684 0.58 -0.1
2,053,030 + DvMF_1684 0.58 -0.4
2,053,030 + DvMF_1684 0.58 -0.3
2,053,030 + DvMF_1684 0.58 +0.0
2,053,030 + DvMF_1684 0.58 -0.6
2,053,038 - DvMF_1684 0.59 -0.3
2,053,038 - DvMF_1684 0.59 -0.1
2,053,419 + -0.3
2,053,419 + -0.0
2,053,427 - +0.3
2,053,427 - -0.1
2,053,578 + DvMF_1685 0.42 -0.8
2,053,719 + DvMF_1685 0.86 -0.4
2,053,727 - DvMF_1685 0.88 -0.6
2,053,737 - +0.1
2,053,918 - -0.4
2,053,957 + DvMF_1686 0.19 -0.6
2,053,975 - DvMF_1686 0.29 -0.5
2,054,261 - -0.3
2,054,264 + -0.3
2,054,375 + -0.1
2,054,425 + -0.2
2,054,427 + -0.6
2,054,534 - -0.1
2,054,537 - -0.6
2,054,591 - DvMF_1687 0.14 -0.3
2,054,714 + DvMF_1687 0.25 -0.7

Or see this region's nucleotide sequence