Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1224

Experiment: methionine 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1223 and DvMF_1224 are separated by 290 nucleotidesDvMF_1224 and DvMF_1225 are separated by 132 nucleotides DvMF_1223: DvMF_1223 - anti-sigma-factor antagonist (RefSeq), at 1,507,691 to 1,508,506 _1223 DvMF_1224: DvMF_1224 - two component transcriptional regulator, LytTR family (RefSeq), at 1,508,797 to 1,509,579 _1224 DvMF_1225: DvMF_1225 - signal transduction histidine kinase, LytS (RefSeq), at 1,509,712 to 1,511,523 _1225 Position (kb) 1508 1509 1510Strain fitness (log2 ratio) -2 -1 0 1at 1507.928 kb on + strand, within DvMF_1223at 1508.056 kb on - strand, within DvMF_1223at 1508.240 kb on + strand, within DvMF_1223at 1508.408 kb on - strand, within DvMF_1223at 1508.558 kb on + strandat 1508.561 kb on - strandat 1508.593 kb on + strandat 1508.593 kb on + strandat 1508.624 kb on - strandat 1508.676 kb on + strandat 1508.867 kb on - strandat 1509.518 kb on + strandat 1510.157 kb on + strand, within DvMF_1225at 1510.158 kb on - strand, within DvMF_1225at 1510.362 kb on + strand, within DvMF_1225at 1510.382 kb on + strand, within DvMF_1225at 1510.497 kb on - strand, within DvMF_1225at 1510.540 kb on - strand, within DvMF_1225

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Per-strain Table

Position Strand Gene LocusTag Fraction methionine 1 mM
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1,507,928 + DvMF_1223 0.29 -0.7
1,508,056 - DvMF_1223 0.45 -0.7
1,508,240 + DvMF_1223 0.67 -0.5
1,508,408 - DvMF_1223 0.88 -0.1
1,508,558 + -0.0
1,508,561 - -1.0
1,508,593 + +0.2
1,508,593 + -0.9
1,508,624 - -0.4
1,508,676 + -0.0
1,508,867 - -2.4
1,509,518 + -1.4
1,510,157 + DvMF_1225 0.25 -2.7
1,510,158 - DvMF_1225 0.25 -1.9
1,510,362 + DvMF_1225 0.36 -2.2
1,510,382 + DvMF_1225 0.37 -1.4
1,510,497 - DvMF_1225 0.43 -1.2
1,510,540 - DvMF_1225 0.46 -0.5

Or see this region's nucleotide sequence