Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0810

Experiment: methionine 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0809 and DvMF_0810 are separated by 155 nucleotidesDvMF_0810 and DvMF_0811 are separated by 383 nucleotides DvMF_0809: DvMF_0809 - glycerol kinase (RefSeq), at 975,417 to 976,910 _0809 DvMF_0810: DvMF_0810 - major intrinsic protein (RefSeq), at 977,066 to 977,824 _0810 DvMF_0811: DvMF_0811 - FAD dependent oxidoreductase (RefSeq), at 978,208 to 979,836 _0811 Position (kb) 977 978Strain fitness (log2 ratio) -3 -2 -1 0 1at 976.093 kb on + strand, within DvMF_0809at 976.272 kb on - strand, within DvMF_0809at 976.482 kb on + strand, within DvMF_0809at 976.615 kb on + strand, within DvMF_0809at 976.644 kb on + strand, within DvMF_0809at 976.746 kb on - strand, within DvMF_0809at 977.079 kb on + strandat 977.189 kb on - strand, within DvMF_0810at 977.191 kb on + strand, within DvMF_0810at 977.255 kb on + strand, within DvMF_0810at 977.272 kb on + strand, within DvMF_0810at 977.421 kb on - strand, within DvMF_0810at 977.556 kb on + strand, within DvMF_0810at 978.008 kb on - strandat 978.173 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methionine 1 mM
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976,093 + DvMF_0809 0.45 -1.0
976,272 - DvMF_0809 0.57 -0.7
976,482 + DvMF_0809 0.71 -0.2
976,615 + DvMF_0809 0.80 -1.6
976,644 + DvMF_0809 0.82 +0.4
976,746 - DvMF_0809 0.89 -0.0
977,079 + -3.0
977,189 - DvMF_0810 0.16 -1.1
977,191 + DvMF_0810 0.16 -0.9
977,255 + DvMF_0810 0.25 -0.4
977,272 + DvMF_0810 0.27 -0.6
977,421 - DvMF_0810 0.47 -0.5
977,556 + DvMF_0810 0.65 -0.5
978,008 - -0.1
978,173 + -0.8

Or see this region's nucleotide sequence