Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0591

Experiment: methionine 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0590 and DvMF_0591 are separated by 313 nucleotidesDvMF_0591 and DvMF_0592 are separated by 239 nucleotides DvMF_0590: DvMF_0590 - ATP-dependent protease, putative (RefSeq), at 699,737 to 702,172 _0590 DvMF_0591: DvMF_0591 - hypothetical protein (RefSeq), at 702,486 to 702,674 _0591 DvMF_0592: DvMF_0592 - major facilitator superfamily MFS_1 (RefSeq), at 702,914 to 704,065 _0592 Position (kb) 702 703Strain fitness (log2 ratio) -1 0 1at 702.074 kb on + strandat 702.216 kb on - strandat 702.738 kb on - strandat 702.963 kb on + strandat 702.965 kb on + strandat 703.034 kb on + strand, within DvMF_0592at 703.050 kb on + strand, within DvMF_0592at 703.073 kb on - strand, within DvMF_0592at 703.083 kb on - strand, within DvMF_0592at 703.258 kb on + strand, within DvMF_0592at 703.541 kb on - strand, within DvMF_0592at 703.581 kb on + strand, within DvMF_0592at 703.629 kb on - strand, within DvMF_0592

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Per-strain Table

Position Strand Gene LocusTag Fraction methionine 1 mM
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702,074 + -0.3
702,216 - -0.8
702,738 - -0.2
702,963 + -0.9
702,965 + -0.3
703,034 + DvMF_0592 0.10 -0.4
703,050 + DvMF_0592 0.12 -1.1
703,073 - DvMF_0592 0.14 -0.5
703,083 - DvMF_0592 0.15 -0.5
703,258 + DvMF_0592 0.30 -0.4
703,541 - DvMF_0592 0.54 -0.7
703,581 + DvMF_0592 0.58 -0.1
703,629 - DvMF_0592 0.62 -0.3

Or see this region's nucleotide sequence