Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4109

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4108 and Shewana3_4109 are separated by 385 nucleotidesShewana3_4109 and engB are separated by 977 nucleotides Shewana3_4108: Shewana3_4108 - isoprenoid biosynthesis protein with amidotransferase-like domain (RefSeq), at 4,930,273 to 4,930,929 _4108 Shewana3_4109: Shewana3_4109 - DNA polymerase I (RefSeq), at 4,931,315 to 4,934,083 _4109 Shewana3_4110: engB - ribosome biogenesis GTP-binding protein YsxC (RefSeq), at 4,935,061 to 4,935,720 engB Position (kb) 4931 4932 4933 4934 4935Strain fitness (log2 ratio) -2 -1 0 1at 4930.347 kb on + strand, within Shewana3_4108at 4930.397 kb on - strand, within Shewana3_4108at 4930.397 kb on - strand, within Shewana3_4108at 4930.404 kb on - strand, within Shewana3_4108at 4930.414 kb on - strand, within Shewana3_4108at 4930.443 kb on - strand, within Shewana3_4108at 4930.477 kb on - strand, within Shewana3_4108at 4930.652 kb on + strand, within Shewana3_4108at 4930.652 kb on + strand, within Shewana3_4108at 4930.653 kb on + strand, within Shewana3_4108at 4930.722 kb on - strand, within Shewana3_4108at 4931.219 kb on + strandat 4932.801 kb on + strand, within Shewana3_4109at 4934.223 kb on - strandat 4934.363 kb on + strandat 4934.373 kb on + strandat 4934.393 kb on - strandat 4934.639 kb on + strandat 4934.663 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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4,930,347 + Shewana3_4108 0.11 -0.1
4,930,397 - Shewana3_4108 0.19 -1.6
4,930,397 - Shewana3_4108 0.19 +0.0
4,930,404 - Shewana3_4108 0.20 -1.5
4,930,414 - Shewana3_4108 0.21 +0.4
4,930,443 - Shewana3_4108 0.26 +0.2
4,930,477 - Shewana3_4108 0.31 +0.0
4,930,652 + Shewana3_4108 0.58 -1.2
4,930,652 + Shewana3_4108 0.58 -1.0
4,930,653 + Shewana3_4108 0.58 -0.2
4,930,722 - Shewana3_4108 0.68 -1.1
4,931,219 + -1.8
4,932,801 + Shewana3_4109 0.54 -0.4
4,934,223 - +0.2
4,934,363 + -1.4
4,934,373 + +0.1
4,934,393 - +0.3
4,934,639 + -1.2
4,934,663 + +0.5

Or see this region's nucleotide sequence