Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4032 and Shewana3_4033 are separated by 1 nucleotides Shewana3_4033 and Shewana3_4034 overlap by 1 nucleotides Shewana3_4034 and Shewana3_4035 are separated by 13 nucleotides
Shewana3_4032: Shewana3_4032 - cytochrome c oxidase, subunit I (RefSeq), at 4,845,079 to 4,847,058
_4032
Shewana3_4033: Shewana3_4033 - cytochrome c oxidase, subunit III (RefSeq), at 4,847,060 to 4,847,680
_4033
Shewana3_4034: Shewana3_4034 - cytochrome C oxidase subunit IV (RefSeq), at 4,847,680 to 4,848,021
_4034
Shewana3_4035: Shewana3_4035 - protoheme IX farnesyltransferase (RefSeq), at 4,848,035 to 4,848,967
_4035
Position (kb)
4847
4848
4849 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4846.707 kb on - strand, within Shewana3_4032 at 4846.883 kb on - strand at 4846.883 kb on - strand at 4847.057 kb on + strand at 4847.224 kb on - strand, within Shewana3_4033 at 4847.309 kb on + strand, within Shewana3_4033 at 4847.372 kb on + strand, within Shewana3_4033 at 4847.380 kb on - strand, within Shewana3_4033 at 4847.380 kb on - strand, within Shewana3_4033 at 4847.380 kb on - strand, within Shewana3_4033 at 4847.522 kb on + strand, within Shewana3_4033 at 4847.591 kb on + strand, within Shewana3_4033 at 4847.591 kb on + strand, within Shewana3_4033 at 4847.599 kb on - strand, within Shewana3_4033 at 4847.662 kb on - strand at 4847.759 kb on + strand, within Shewana3_4034 at 4847.906 kb on + strand, within Shewana3_4034 at 4848.224 kb on + strand, within Shewana3_4035 at 4848.348 kb on + strand, within Shewana3_4035 at 4848.348 kb on + strand, within Shewana3_4035 at 4848.348 kb on + strand, within Shewana3_4035 at 4848.727 kb on + strand, within Shewana3_4035 at 4848.776 kb on + strand, within Shewana3_4035 at 4848.812 kb on - strand, within Shewana3_4035 at 4848.825 kb on - strand, within Shewana3_4035 at 4848.832 kb on - strand, within Shewana3_4035
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 4,846,707 - Shewana3_4032 0.82 +0.9 4,846,883 - +2.6 4,846,883 - -1.5 4,847,057 + -1.2 4,847,224 - Shewana3_4033 0.26 -0.4 4,847,309 + Shewana3_4033 0.40 -1.3 4,847,372 + Shewana3_4033 0.50 -1.5 4,847,380 - Shewana3_4033 0.52 -1.7 4,847,380 - Shewana3_4033 0.52 +1.2 4,847,380 - Shewana3_4033 0.52 +0.2 4,847,522 + Shewana3_4033 0.74 +0.3 4,847,591 + Shewana3_4033 0.86 +1.2 4,847,591 + Shewana3_4033 0.86 -2.2 4,847,599 - Shewana3_4033 0.87 -1.3 4,847,662 - +0.1 4,847,759 + Shewana3_4034 0.23 -0.3 4,847,906 + Shewana3_4034 0.66 +1.0 4,848,224 + Shewana3_4035 0.20 -0.2 4,848,348 + Shewana3_4035 0.34 -1.2 4,848,348 + Shewana3_4035 0.34 +0.6 4,848,348 + Shewana3_4035 0.34 +0.1 4,848,727 + Shewana3_4035 0.74 -0.6 4,848,776 + Shewana3_4035 0.79 +0.5 4,848,812 - Shewana3_4035 0.83 +0.7 4,848,825 - Shewana3_4035 0.85 +0.1 4,848,832 - Shewana3_4035 0.85 -1.5
Or see this region's nucleotide sequence