Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3971

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3970 and Shewana3_3971 overlap by 4 nucleotidesShewana3_3971 and Shewana3_3972 are separated by 3 nucleotides Shewana3_3970: Shewana3_3970 - cell division protein FtsX (RefSeq), at 4,769,353 to 4,770,318 _3970 Shewana3_3971: Shewana3_3971 - cell division ATP-binding protein FtsE (RefSeq), at 4,770,315 to 4,771,016 _3971 Shewana3_3972: Shewana3_3972 - signal recognition particle-docking protein FtsY (RefSeq), at 4,771,020 to 4,772,708 _3972 Position (kb) 4770 4771 4772Strain fitness (log2 ratio) -1 0 1 2at 4769.320 kb on - strandat 4769.367 kb on - strandat 4769.378 kb on - strandat 4769.394 kb on + strandat 4769.607 kb on + strand, within Shewana3_3970at 4769.615 kb on - strand, within Shewana3_3970at 4769.706 kb on + strand, within Shewana3_3970at 4769.741 kb on - strand, within Shewana3_3970at 4769.822 kb on + strand, within Shewana3_3970at 4769.836 kb on - strand, within Shewana3_3970at 4769.923 kb on + strand, within Shewana3_3970at 4769.931 kb on - strand, within Shewana3_3970at 4770.008 kb on + strand, within Shewana3_3970at 4770.022 kb on - strand, within Shewana3_3970at 4770.042 kb on - strand, within Shewana3_3970at 4770.161 kb on - strand, within Shewana3_3970at 4770.182 kb on - strand, within Shewana3_3970at 4770.320 kb on + strandat 4770.321 kb on - strandat 4770.322 kb on - strandat 4770.422 kb on + strand, within Shewana3_3971at 4770.508 kb on + strand, within Shewana3_3971at 4770.509 kb on + strand, within Shewana3_3971at 4770.618 kb on + strand, within Shewana3_3971at 4770.731 kb on - strand, within Shewana3_3971at 4770.887 kb on + strand, within Shewana3_3971at 4770.990 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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4,769,320 - -1.3
4,769,367 - +0.3
4,769,378 - +1.4
4,769,394 + +1.6
4,769,607 + Shewana3_3970 0.26 -1.3
4,769,615 - Shewana3_3970 0.27 +0.4
4,769,706 + Shewana3_3970 0.37 +1.8
4,769,741 - Shewana3_3970 0.40 +0.9
4,769,822 + Shewana3_3970 0.49 -1.4
4,769,836 - Shewana3_3970 0.50 +0.7
4,769,923 + Shewana3_3970 0.59 -0.7
4,769,931 - Shewana3_3970 0.60 +0.9
4,770,008 + Shewana3_3970 0.68 +1.4
4,770,022 - Shewana3_3970 0.69 -0.8
4,770,042 - Shewana3_3970 0.71 -1.1
4,770,161 - Shewana3_3970 0.84 +0.4
4,770,182 - Shewana3_3970 0.86 +1.3
4,770,320 + +0.5
4,770,321 - +0.4
4,770,322 - -0.7
4,770,422 + Shewana3_3971 0.15 +2.2
4,770,508 + Shewana3_3971 0.27 +0.6
4,770,509 + Shewana3_3971 0.28 +0.7
4,770,618 + Shewana3_3971 0.43 +0.2
4,770,731 - Shewana3_3971 0.59 -0.6
4,770,887 + Shewana3_3971 0.81 +0.2
4,770,990 - -0.1

Or see this region's nucleotide sequence