Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3822 and Shewana3_3823 are separated by 60 nucleotides Shewana3_3823 and Shewana3_3824 are separated by 348 nucleotides Shewana3_3824 and prpB are separated by 66 nucleotides
Shewana3_3822: Shewana3_3822 - putative acyltransferase (RefSeq), at 4,589,625 to 4,590,566
_3822
Shewana3_3823: Shewana3_3823 - hypothetical protein (RefSeq), at 4,590,627 to 4,591,100
_3823
Shewana3_3824: Shewana3_3824 - GntR family transcriptional regulator (RefSeq), at 4,591,449 to 4,592,237
_3824
Shewana3_3825: prpB - 2-methylisocitrate lyase (RefSeq), at 4,592,304 to 4,593,182
prpB
Position (kb) 4591
4592
4593 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4590.620 kb on + strand at 4590.620 kb on + strand at 4590.628 kb on - strand at 4590.941 kb on + strand, within Shewana3_3823 at 4591.138 kb on - strand at 4591.145 kb on - strand at 4591.200 kb on - strand at 4591.471 kb on - strand at 4591.758 kb on - strand, within Shewana3_3824 at 4591.872 kb on - strand, within Shewana3_3824 at 4591.901 kb on + strand, within Shewana3_3824 at 4591.909 kb on - strand, within Shewana3_3824 at 4591.926 kb on + strand, within Shewana3_3824 at 4592.017 kb on - strand, within Shewana3_3824 at 4592.061 kb on + strand, within Shewana3_3824 at 4592.061 kb on + strand, within Shewana3_3824 at 4592.069 kb on - strand, within Shewana3_3824 at 4592.116 kb on - strand, within Shewana3_3824 at 4592.264 kb on + strand at 4592.302 kb on - strand at 4592.308 kb on - strand at 4592.319 kb on + strand at 4592.337 kb on + strand at 4592.405 kb on + strand, within prpB at 4592.512 kb on - strand, within prpB at 4592.565 kb on + strand, within prpB at 4592.565 kb on + strand, within prpB at 4592.573 kb on - strand, within prpB at 4592.573 kb on - strand, within prpB at 4592.573 kb on - strand, within prpB at 4592.695 kb on + strand, within prpB at 4592.861 kb on + strand, within prpB at 4592.870 kb on - strand, within prpB at 4593.004 kb on - strand, within prpB at 4593.013 kb on - strand, within prpB at 4593.059 kb on + strand, within prpB at 4593.084 kb on + strand, within prpB at 4593.084 kb on + strand, within prpB at 4593.084 kb on + strand, within prpB at 4593.084 kb on + strand, within prpB at 4593.084 kb on + strand, within prpB at 4593.092 kb on - strand, within prpB at 4593.092 kb on - strand, within prpB at 4593.096 kb on + strand at 4593.096 kb on + strand at 4593.096 kb on + strand at 4593.104 kb on - strand at 4593.104 kb on - strand at 4593.106 kb on + strand at 4593.222 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 4,590,620 + -0.1 4,590,620 + +0.4 4,590,628 - -0.0 4,590,941 + Shewana3_3823 0.66 -1.3 4,591,138 - -0.6 4,591,145 - -0.4 4,591,200 - +0.2 4,591,471 - -0.0 4,591,758 - Shewana3_3824 0.39 +1.1 4,591,872 - Shewana3_3824 0.54 -0.1 4,591,901 + Shewana3_3824 0.57 -1.1 4,591,909 - Shewana3_3824 0.58 -0.0 4,591,926 + Shewana3_3824 0.60 -2.0 4,592,017 - Shewana3_3824 0.72 -1.2 4,592,061 + Shewana3_3824 0.78 +0.0 4,592,061 + Shewana3_3824 0.78 +0.2 4,592,069 - Shewana3_3824 0.79 -1.5 4,592,116 - Shewana3_3824 0.85 +0.2 4,592,264 + +0.2 4,592,302 - -1.0 4,592,308 - -0.1 4,592,319 + -2.4 4,592,337 + -3.7 4,592,405 + prpB Shewana3_3825 0.11 -3.9 4,592,512 - prpB Shewana3_3825 0.24 +0.5 4,592,565 + prpB Shewana3_3825 0.30 -3.6 4,592,565 + prpB Shewana3_3825 0.30 -2.5 4,592,573 - prpB Shewana3_3825 0.31 +0.2 4,592,573 - prpB Shewana3_3825 0.31 +0.3 4,592,573 - prpB Shewana3_3825 0.31 +0.1 4,592,695 + prpB Shewana3_3825 0.44 -3.8 4,592,861 + prpB Shewana3_3825 0.63 -4.3 4,592,870 - prpB Shewana3_3825 0.64 -1.4 4,593,004 - prpB Shewana3_3825 0.80 -0.1 4,593,013 - prpB Shewana3_3825 0.81 +0.3 4,593,059 + prpB Shewana3_3825 0.86 -3.1 4,593,084 + prpB Shewana3_3825 0.89 -5.3 4,593,084 + prpB Shewana3_3825 0.89 -4.1 4,593,084 + prpB Shewana3_3825 0.89 -2.2 4,593,084 + prpB Shewana3_3825 0.89 -4.3 4,593,084 + prpB Shewana3_3825 0.89 -4.2 4,593,092 - prpB Shewana3_3825 0.90 +0.1 4,593,092 - prpB Shewana3_3825 0.90 -1.2 4,593,096 + -2.9 4,593,096 + -4.3 4,593,096 + -4.1 4,593,104 - -0.5 4,593,104 - +0.0 4,593,106 + -3.8 4,593,222 - -0.0
Or see this region's nucleotide sequence