Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3803

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3802 and Shewana3_3803 overlap by 4 nucleotidesShewana3_3803 and Shewana3_3804 are separated by 160 nucleotides Shewana3_3802: Shewana3_3802 - hypothetical protein (RefSeq), at 4,566,493 to 4,568,448 _3802 Shewana3_3803: Shewana3_3803 - XRE family transcriptional regulator (RefSeq), at 4,568,445 to 4,568,675 _3803 Shewana3_3804: Shewana3_3804 - filamentation induced by cAMP protein Fic (RefSeq), at 4,568,836 to 4,569,951 _3804 Position (kb) 4568 4569Strain fitness (log2 ratio) -1 0 1at 4567.512 kb on - strand, within Shewana3_3802at 4567.565 kb on + strand, within Shewana3_3802at 4567.585 kb on + strand, within Shewana3_3802at 4567.593 kb on - strand, within Shewana3_3802at 4567.833 kb on + strand, within Shewana3_3802at 4567.841 kb on - strand, within Shewana3_3802at 4567.931 kb on + strand, within Shewana3_3802at 4567.936 kb on + strand, within Shewana3_3802at 4568.152 kb on + strand, within Shewana3_3802at 4568.152 kb on + strand, within Shewana3_3802at 4568.152 kb on + strand, within Shewana3_3802at 4568.288 kb on + strandat 4568.392 kb on + strandat 4568.400 kb on - strandat 4568.469 kb on + strand, within Shewana3_3803at 4568.564 kb on + strand, within Shewana3_3803at 4568.574 kb on + strand, within Shewana3_3803at 4568.942 kb on + strandat 4569.038 kb on - strand, within Shewana3_3804at 4569.086 kb on + strand, within Shewana3_3804at 4569.086 kb on + strand, within Shewana3_3804at 4569.123 kb on + strand, within Shewana3_3804at 4569.131 kb on - strand, within Shewana3_3804at 4569.229 kb on + strand, within Shewana3_3804at 4569.229 kb on + strand, within Shewana3_3804at 4569.239 kb on + strand, within Shewana3_3804at 4569.335 kb on - strand, within Shewana3_3804at 4569.410 kb on - strand, within Shewana3_3804at 4569.434 kb on + strand, within Shewana3_3804at 4569.550 kb on - strand, within Shewana3_3804at 4569.560 kb on - strand, within Shewana3_3804at 4569.604 kb on + strand, within Shewana3_3804

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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4,567,512 - Shewana3_3802 0.52 -1.5
4,567,565 + Shewana3_3802 0.55 +0.4
4,567,585 + Shewana3_3802 0.56 +0.5
4,567,593 - Shewana3_3802 0.56 +0.3
4,567,833 + Shewana3_3802 0.69 +0.8
4,567,841 - Shewana3_3802 0.69 +0.2
4,567,931 + Shewana3_3802 0.74 -0.4
4,567,936 + Shewana3_3802 0.74 -1.3
4,568,152 + Shewana3_3802 0.85 -1.5
4,568,152 + Shewana3_3802 0.85 +1.1
4,568,152 + Shewana3_3802 0.85 -0.1
4,568,288 + +0.2
4,568,392 + -0.4
4,568,400 - +1.2
4,568,469 + Shewana3_3803 0.10 -1.6
4,568,564 + Shewana3_3803 0.52 -1.2
4,568,574 + Shewana3_3803 0.56 -1.0
4,568,942 + +0.0
4,569,038 - Shewana3_3804 0.18 +0.2
4,569,086 + Shewana3_3804 0.22 +0.4
4,569,086 + Shewana3_3804 0.22 +0.4
4,569,123 + Shewana3_3804 0.26 -0.8
4,569,131 - Shewana3_3804 0.26 +0.5
4,569,229 + Shewana3_3804 0.35 +0.4
4,569,229 + Shewana3_3804 0.35 -0.1
4,569,239 + Shewana3_3804 0.36 +0.4
4,569,335 - Shewana3_3804 0.45 +0.5
4,569,410 - Shewana3_3804 0.51 -0.2
4,569,434 + Shewana3_3804 0.54 -0.6
4,569,550 - Shewana3_3804 0.64 +0.5
4,569,560 - Shewana3_3804 0.65 +1.1
4,569,604 + Shewana3_3804 0.69 -1.3

Or see this region's nucleotide sequence