Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3802 and Shewana3_3803 overlap by 4 nucleotides Shewana3_3803 and Shewana3_3804 are separated by 160 nucleotides
Shewana3_3802: Shewana3_3802 - hypothetical protein (RefSeq), at 4,566,493 to 4,568,448
_3802
Shewana3_3803: Shewana3_3803 - XRE family transcriptional regulator (RefSeq), at 4,568,445 to 4,568,675
_3803
Shewana3_3804: Shewana3_3804 - filamentation induced by cAMP protein Fic (RefSeq), at 4,568,836 to 4,569,951
_3804
Position (kb)
4568
4569 Strain fitness (log2 ratio)
-1
0
1 at 4567.512 kb on - strand, within Shewana3_3802 at 4567.565 kb on + strand, within Shewana3_3802 at 4567.585 kb on + strand, within Shewana3_3802 at 4567.593 kb on - strand, within Shewana3_3802 at 4567.833 kb on + strand, within Shewana3_3802 at 4567.841 kb on - strand, within Shewana3_3802 at 4567.931 kb on + strand, within Shewana3_3802 at 4567.936 kb on + strand, within Shewana3_3802 at 4568.152 kb on + strand, within Shewana3_3802 at 4568.152 kb on + strand, within Shewana3_3802 at 4568.152 kb on + strand, within Shewana3_3802 at 4568.288 kb on + strand at 4568.392 kb on + strand at 4568.400 kb on - strand at 4568.469 kb on + strand, within Shewana3_3803 at 4568.564 kb on + strand, within Shewana3_3803 at 4568.574 kb on + strand, within Shewana3_3803 at 4568.942 kb on + strand at 4569.038 kb on - strand, within Shewana3_3804 at 4569.086 kb on + strand, within Shewana3_3804 at 4569.086 kb on + strand, within Shewana3_3804 at 4569.123 kb on + strand, within Shewana3_3804 at 4569.131 kb on - strand, within Shewana3_3804 at 4569.229 kb on + strand, within Shewana3_3804 at 4569.229 kb on + strand, within Shewana3_3804 at 4569.239 kb on + strand, within Shewana3_3804 at 4569.335 kb on - strand, within Shewana3_3804 at 4569.410 kb on - strand, within Shewana3_3804 at 4569.434 kb on + strand, within Shewana3_3804 at 4569.550 kb on - strand, within Shewana3_3804 at 4569.560 kb on - strand, within Shewana3_3804 at 4569.604 kb on + strand, within Shewana3_3804
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 4,567,512 - Shewana3_3802 0.52 -1.5 4,567,565 + Shewana3_3802 0.55 +0.4 4,567,585 + Shewana3_3802 0.56 +0.5 4,567,593 - Shewana3_3802 0.56 +0.3 4,567,833 + Shewana3_3802 0.69 +0.8 4,567,841 - Shewana3_3802 0.69 +0.2 4,567,931 + Shewana3_3802 0.74 -0.4 4,567,936 + Shewana3_3802 0.74 -1.3 4,568,152 + Shewana3_3802 0.85 -1.5 4,568,152 + Shewana3_3802 0.85 +1.1 4,568,152 + Shewana3_3802 0.85 -0.1 4,568,288 + +0.2 4,568,392 + -0.4 4,568,400 - +1.2 4,568,469 + Shewana3_3803 0.10 -1.6 4,568,564 + Shewana3_3803 0.52 -1.2 4,568,574 + Shewana3_3803 0.56 -1.0 4,568,942 + +0.0 4,569,038 - Shewana3_3804 0.18 +0.2 4,569,086 + Shewana3_3804 0.22 +0.4 4,569,086 + Shewana3_3804 0.22 +0.4 4,569,123 + Shewana3_3804 0.26 -0.8 4,569,131 - Shewana3_3804 0.26 +0.5 4,569,229 + Shewana3_3804 0.35 +0.4 4,569,229 + Shewana3_3804 0.35 -0.1 4,569,239 + Shewana3_3804 0.36 +0.4 4,569,335 - Shewana3_3804 0.45 +0.5 4,569,410 - Shewana3_3804 0.51 -0.2 4,569,434 + Shewana3_3804 0.54 -0.6 4,569,550 - Shewana3_3804 0.64 +0.5 4,569,560 - Shewana3_3804 0.65 +1.1 4,569,604 + Shewana3_3804 0.69 -1.3
Or see this region's nucleotide sequence