Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3584 and Shewana3_3585 are separated by 65 nucleotides Shewana3_3585 and Shewana3_3586 are separated by 450 nucleotides
Shewana3_3584: Shewana3_3584 - MltD domain-containing protein (RefSeq), at 4,300,980 to 4,302,404
_3584
Shewana3_3585: Shewana3_3585 - hypothetical protein (RefSeq), at 4,302,470 to 4,303,843
_3585
Shewana3_3586: Shewana3_3586 - DNA-binding transcriptional regulator YidZ (RefSeq), at 4,304,294 to 4,305,259
_3586
Position (kb)
4302
4303
4304 Strain fitness (log2 ratio)
-1
0
1 at 4301.518 kb on - strand, within Shewana3_3584 at 4301.536 kb on + strand, within Shewana3_3584 at 4301.564 kb on - strand, within Shewana3_3584 at 4301.589 kb on - strand, within Shewana3_3584 at 4301.597 kb on - strand, within Shewana3_3584 at 4301.597 kb on - strand, within Shewana3_3584 at 4301.737 kb on + strand, within Shewana3_3584 at 4301.861 kb on - strand, within Shewana3_3584 at 4302.129 kb on - strand, within Shewana3_3584 at 4302.172 kb on + strand, within Shewana3_3584 at 4302.224 kb on - strand, within Shewana3_3584 at 4302.468 kb on + strand at 4302.490 kb on + strand at 4302.600 kb on + strand at 4302.636 kb on + strand, within Shewana3_3585 at 4302.636 kb on + strand, within Shewana3_3585 at 4302.644 kb on + strand, within Shewana3_3585 at 4302.644 kb on - strand, within Shewana3_3585 at 4302.951 kb on - strand, within Shewana3_3585 at 4303.228 kb on + strand, within Shewana3_3585 at 4303.251 kb on + strand, within Shewana3_3585 at 4303.259 kb on - strand, within Shewana3_3585 at 4303.342 kb on - strand, within Shewana3_3585 at 4303.390 kb on + strand, within Shewana3_3585 at 4303.457 kb on - strand, within Shewana3_3585 at 4303.610 kb on - strand, within Shewana3_3585 at 4303.621 kb on + strand, within Shewana3_3585 at 4304.199 kb on - strand at 4304.238 kb on + strand at 4304.452 kb on - strand, within Shewana3_3586 at 4304.540 kb on - strand, within Shewana3_3586 at 4304.566 kb on - strand, within Shewana3_3586 at 4304.566 kb on - strand at 4304.596 kb on + strand, within Shewana3_3586 at 4304.724 kb on - strand, within Shewana3_3586
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 4,301,518 - Shewana3_3584 0.38 -1.2 4,301,536 + Shewana3_3584 0.39 -0.2 4,301,564 - Shewana3_3584 0.41 +0.7 4,301,589 - Shewana3_3584 0.43 +1.1 4,301,597 - Shewana3_3584 0.43 -0.7 4,301,597 - Shewana3_3584 0.43 -1.5 4,301,737 + Shewana3_3584 0.53 -1.3 4,301,861 - Shewana3_3584 0.62 +0.2 4,302,129 - Shewana3_3584 0.81 -1.2 4,302,172 + Shewana3_3584 0.84 -1.2 4,302,224 - Shewana3_3584 0.87 -0.0 4,302,468 + +0.4 4,302,490 + +0.2 4,302,600 + +0.1 4,302,636 + Shewana3_3585 0.12 -0.0 4,302,636 + Shewana3_3585 0.12 +0.0 4,302,644 + Shewana3_3585 0.13 +0.0 4,302,644 - Shewana3_3585 0.13 +0.4 4,302,951 - Shewana3_3585 0.35 +0.7 4,303,228 + Shewana3_3585 0.55 +0.2 4,303,251 + Shewana3_3585 0.57 -0.1 4,303,259 - Shewana3_3585 0.57 +0.5 4,303,342 - Shewana3_3585 0.63 -0.1 4,303,390 + Shewana3_3585 0.67 +0.3 4,303,457 - Shewana3_3585 0.72 -1.7 4,303,610 - Shewana3_3585 0.83 +0.1 4,303,621 + Shewana3_3585 0.84 +0.3 4,304,199 - +0.2 4,304,238 + -1.0 4,304,452 - Shewana3_3586 0.16 +0.8 4,304,540 - Shewana3_3586 0.25 +0.2 4,304,566 - Shewana3_3586 0.28 +0.5 4,304,566 - +0.3 4,304,596 + Shewana3_3586 0.31 +0.4 4,304,724 - Shewana3_3586 0.45 +0.1
Or see this region's nucleotide sequence