Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3508

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3507 and Shewana3_3508 are separated by 210 nucleotidesShewana3_3508 and Shewana3_3509 are separated by 80 nucleotides Shewana3_3507: Shewana3_3507 - short chain dehydrogenase (RefSeq), at 4,207,997 to 4,208,716 _3507 Shewana3_3508: Shewana3_3508 - putative thiol-disulphide oxidoreductase DCC (RefSeq), at 4,208,927 to 4,209,316 _3508 Shewana3_3509: Shewana3_3509 - malate dehydrogenase (RefSeq), at 4,209,397 to 4,210,332 _3509 Position (kb) 4208 4209 4210Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 4207.934 kb on + strandat 4208.201 kb on - strand, within Shewana3_3507at 4208.225 kb on + strand, within Shewana3_3507at 4208.233 kb on - strand, within Shewana3_3507at 4208.428 kb on - strand, within Shewana3_3507at 4208.490 kb on - strand, within Shewana3_3507at 4208.563 kb on + strand, within Shewana3_3507at 4208.563 kb on + strand, within Shewana3_3507at 4208.564 kb on + strand, within Shewana3_3507at 4208.572 kb on - strand, within Shewana3_3507at 4208.572 kb on - strand, within Shewana3_3507at 4208.577 kb on + strand, within Shewana3_3507at 4208.605 kb on + strand, within Shewana3_3507at 4208.605 kb on + strand, within Shewana3_3507at 4208.760 kb on - strandat 4208.760 kb on - strandat 4208.985 kb on + strand, within Shewana3_3508at 4208.985 kb on + strand, within Shewana3_3508at 4209.074 kb on + strand, within Shewana3_3508at 4209.074 kb on + strand, within Shewana3_3508at 4209.082 kb on - strand, within Shewana3_3508at 4209.139 kb on + strand, within Shewana3_3508at 4209.185 kb on + strand, within Shewana3_3508at 4209.491 kb on - strand, within Shewana3_3509at 4209.650 kb on + strand, within Shewana3_3509at 4209.991 kb on + strand, within Shewana3_3509at 4210.083 kb on - strand, within Shewana3_3509at 4210.129 kb on + strand, within Shewana3_3509at 4210.312 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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4,207,934 + +0.1
4,208,201 - Shewana3_3507 0.28 +1.0
4,208,225 + Shewana3_3507 0.32 -0.8
4,208,233 - Shewana3_3507 0.33 -1.1
4,208,428 - Shewana3_3507 0.60 +0.3
4,208,490 - Shewana3_3507 0.68 -1.3
4,208,563 + Shewana3_3507 0.79 +0.2
4,208,563 + Shewana3_3507 0.79 +0.8
4,208,564 + Shewana3_3507 0.79 +0.3
4,208,572 - Shewana3_3507 0.80 -1.0
4,208,572 - Shewana3_3507 0.80 +0.4
4,208,577 + Shewana3_3507 0.81 +0.2
4,208,605 + Shewana3_3507 0.84 -1.3
4,208,605 + Shewana3_3507 0.84 +1.3
4,208,760 - +0.1
4,208,760 - +0.5
4,208,985 + Shewana3_3508 0.15 -1.2
4,208,985 + Shewana3_3508 0.15 +3.3
4,209,074 + Shewana3_3508 0.38 +0.9
4,209,074 + Shewana3_3508 0.38 -1.8
4,209,082 - Shewana3_3508 0.40 -0.1
4,209,139 + Shewana3_3508 0.54 +0.6
4,209,185 + Shewana3_3508 0.66 +0.6
4,209,491 - Shewana3_3509 0.10 -5.7
4,209,650 + Shewana3_3509 0.27 -3.8
4,209,991 + Shewana3_3509 0.63 -5.8
4,210,083 - Shewana3_3509 0.73 -3.5
4,210,129 + Shewana3_3509 0.78 -1.2
4,210,312 + -2.4

Or see this region's nucleotide sequence