Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3260

Experiment: L-Arabinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_3259 and Shewana3_3260 are separated by 8 nucleotidesShewana3_3260 and Shewana3_3261 are separated by 95 nucleotidesShewana3_3261 and Shewana3_3262 overlap by 1 nucleotides Shewana3_3259: Shewana3_3259 - hypothetical protein (RefSeq), at 3,901,143 to 3,902,447 _3259 Shewana3_3260: Shewana3_3260 - ABC transporter related (RefSeq), at 3,902,456 to 3,903,196 _3260 Shewana3_3261: Shewana3_3261 - hypothetical protein (RefSeq), at 3,903,292 to 3,903,663 _3261 Shewana3_3262: Shewana3_3262 - RND family efflux transporter MFP subunit (RefSeq), at 3,903,663 to 3,904,925 _3262 Position (kb) 3902 3903 3904Strain fitness (log2 ratio) -2 -1 0 1at 3901.503 kb on - strand, within Shewana3_3259at 3901.659 kb on + strand, within Shewana3_3259at 3901.713 kb on - strand, within Shewana3_3259at 3901.731 kb on - strand, within Shewana3_3259at 3901.802 kb on + strand, within Shewana3_3259at 3901.820 kb on - strand, within Shewana3_3259at 3901.888 kb on + strand, within Shewana3_3259at 3901.980 kb on - strand, within Shewana3_3259at 3902.166 kb on + strand, within Shewana3_3259at 3902.460 kb on + strandat 3902.495 kb on - strandat 3902.551 kb on - strand, within Shewana3_3260at 3902.676 kb on - strand, within Shewana3_3260at 3902.676 kb on - strand, within Shewana3_3260at 3902.846 kb on - strand, within Shewana3_3260at 3902.992 kb on + strand, within Shewana3_3260at 3903.284 kb on - strandat 3903.585 kb on - strand, within Shewana3_3261at 3903.711 kb on - strandat 3903.766 kb on - strandat 3903.779 kb on + strandat 3903.779 kb on + strandat 3903.875 kb on + strand, within Shewana3_3262at 3903.929 kb on + strand, within Shewana3_3262at 3903.971 kb on + strand, within Shewana3_3262at 3903.971 kb on + strand, within Shewana3_3262at 3903.979 kb on - strand, within Shewana3_3262at 3903.986 kb on + strand, within Shewana3_3262at 3904.142 kb on - strand, within Shewana3_3262at 3904.168 kb on + strand, within Shewana3_3262

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
remove
3,901,503 - Shewana3_3259 0.28 -0.3
3,901,659 + Shewana3_3259 0.40 +0.7
3,901,713 - Shewana3_3259 0.44 +0.0
3,901,731 - Shewana3_3259 0.45 +0.3
3,901,802 + Shewana3_3259 0.50 -0.1
3,901,820 - Shewana3_3259 0.52 -2.4
3,901,888 + Shewana3_3259 0.57 +0.8
3,901,980 - Shewana3_3259 0.64 -0.2
3,902,166 + Shewana3_3259 0.78 +0.0
3,902,460 + -1.7
3,902,495 - -0.2
3,902,551 - Shewana3_3260 0.13 +0.5
3,902,676 - Shewana3_3260 0.30 -0.1
3,902,676 - Shewana3_3260 0.30 -0.4
3,902,846 - Shewana3_3260 0.53 -1.7
3,902,992 + Shewana3_3260 0.72 -1.5
3,903,284 - -0.3
3,903,585 - Shewana3_3261 0.79 +0.2
3,903,711 - -0.5
3,903,766 - +0.8
3,903,779 + +0.9
3,903,779 + -0.1
3,903,875 + Shewana3_3262 0.17 -1.6
3,903,929 + Shewana3_3262 0.21 +0.1
3,903,971 + Shewana3_3262 0.24 -1.2
3,903,971 + Shewana3_3262 0.24 +0.4
3,903,979 - Shewana3_3262 0.25 +0.7
3,903,986 + Shewana3_3262 0.26 +0.4
3,904,142 - Shewana3_3262 0.38 +0.2
3,904,168 + Shewana3_3262 0.40 -1.4

Or see this region's nucleotide sequence