Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3186

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3185 and Shewana3_3186 are separated by 28 nucleotidesShewana3_3186 and Shewana3_3187 are separated by 157 nucleotidesShewana3_3187 and cysM are separated by 168 nucleotides Shewana3_3185: Shewana3_3185 - ATPase domain-containing protein (RefSeq), at 3,823,521 to 3,824,789 _3185 Shewana3_3186: Shewana3_3186 - hypothetical protein (RefSeq), at 3,824,818 to 3,825,126 _3186 Shewana3_3187: Shewana3_3187 - hypothetical protein (RefSeq), at 3,825,284 to 3,825,820 _3187 Shewana3_3188: cysM - cysteine synthase B (RefSeq), at 3,825,989 to 3,826,867 cysM Position (kb) 3824 3825 3826Strain fitness (log2 ratio) -1 0 1at 3823.879 kb on - strand, within Shewana3_3185at 3823.957 kb on - strand, within Shewana3_3185at 3823.968 kb on - strand, within Shewana3_3185at 3824.058 kb on + strand, within Shewana3_3185at 3824.065 kb on - strand, within Shewana3_3185at 3824.102 kb on - strand, within Shewana3_3185at 3824.135 kb on - strand, within Shewana3_3185at 3824.182 kb on - strand, within Shewana3_3185at 3824.322 kb on - strand, within Shewana3_3185at 3824.368 kb on - strand, within Shewana3_3185at 3824.398 kb on + strand, within Shewana3_3185at 3824.646 kb on - strand, within Shewana3_3185at 3824.679 kb on - strandat 3824.709 kb on + strandat 3824.727 kb on - strandat 3824.757 kb on + strandat 3825.027 kb on + strand, within Shewana3_3186at 3825.071 kb on + strand, within Shewana3_3186at 3825.387 kb on - strand, within Shewana3_3187at 3825.396 kb on + strand, within Shewana3_3187at 3825.421 kb on - strand, within Shewana3_3187at 3825.441 kb on - strand, within Shewana3_3187at 3825.485 kb on - strand, within Shewana3_3187at 3825.563 kb on + strand, within Shewana3_3187at 3825.568 kb on + strand, within Shewana3_3187at 3825.576 kb on - strand, within Shewana3_3187at 3825.584 kb on - strand, within Shewana3_3187at 3825.820 kb on + strandat 3825.825 kb on + strandat 3825.833 kb on - strandat 3826.082 kb on - strand, within cysM

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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3,823,879 - Shewana3_3185 0.28 -0.5
3,823,957 - Shewana3_3185 0.34 +0.3
3,823,968 - Shewana3_3185 0.35 +0.5
3,824,058 + Shewana3_3185 0.42 +0.8
3,824,065 - Shewana3_3185 0.43 +0.6
3,824,102 - Shewana3_3185 0.46 +0.4
3,824,135 - Shewana3_3185 0.48 +0.8
3,824,182 - Shewana3_3185 0.52 +0.7
3,824,322 - Shewana3_3185 0.63 -1.3
3,824,368 - Shewana3_3185 0.67 -0.2
3,824,398 + Shewana3_3185 0.69 -1.5
3,824,646 - Shewana3_3185 0.89 +0.4
3,824,679 - -0.2
3,824,709 + +0.1
3,824,727 - +0.1
3,824,757 + +0.2
3,825,027 + Shewana3_3186 0.68 +0.3
3,825,071 + Shewana3_3186 0.82 -1.2
3,825,387 - Shewana3_3187 0.19 -1.4
3,825,396 + Shewana3_3187 0.21 +0.6
3,825,421 - Shewana3_3187 0.26 +0.7
3,825,441 - Shewana3_3187 0.29 -1.7
3,825,485 - Shewana3_3187 0.37 +0.3
3,825,563 + Shewana3_3187 0.52 -0.3
3,825,568 + Shewana3_3187 0.53 -1.7
3,825,576 - Shewana3_3187 0.54 +0.3
3,825,584 - Shewana3_3187 0.56 +0.3
3,825,820 + +0.6
3,825,825 + +0.0
3,825,833 - +0.5
3,826,082 - cysM Shewana3_3188 0.11 +1.2

Or see this region's nucleotide sequence