Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3110

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3108 and Shewana3_3109 are separated by 185 nucleotidesShewana3_3109 and Shewana3_3110 are separated by 64 nucleotidesShewana3_3110 and Shewana3_3111 are separated by 339 nucleotides Shewana3_3108: Shewana3_3108 - protein of unknown function DUF861, cupin_3 (RefSeq), at 3,728,256 to 3,728,615 _3108 Shewana3_3109: Shewana3_3109 - hypothetical protein (RefSeq), at 3,728,801 to 3,729,523 _3109 Shewana3_3110: Shewana3_3110 - N-acetylglucosamine transporter nagP (from data), at 3,729,588 to 3,730,886 _3110 Shewana3_3111: Shewana3_3111 - transmembrane glucosamine N-acetyltransferase NagX (from data), at 3,731,226 to 3,732,413 _3111 Position (kb) 3729 3730 3731Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3729.080 kb on - strand, within Shewana3_3109at 3729.086 kb on - strand, within Shewana3_3109at 3729.212 kb on + strand, within Shewana3_3109at 3729.339 kb on + strand, within Shewana3_3109at 3729.358 kb on - strand, within Shewana3_3109at 3729.358 kb on - strand, within Shewana3_3109at 3729.619 kb on + strandat 3729.619 kb on + strandat 3729.619 kb on + strandat 3729.755 kb on - strand, within Shewana3_3110at 3729.828 kb on + strand, within Shewana3_3110at 3729.867 kb on - strand, within Shewana3_3110at 3729.943 kb on - strand, within Shewana3_3110at 3730.047 kb on - strand, within Shewana3_3110at 3730.185 kb on + strand, within Shewana3_3110at 3730.193 kb on - strand, within Shewana3_3110at 3730.193 kb on - strand, within Shewana3_3110at 3730.203 kb on - strand, within Shewana3_3110at 3730.387 kb on - strand, within Shewana3_3110at 3730.387 kb on - strand, within Shewana3_3110at 3730.387 kb on - strand, within Shewana3_3110at 3730.530 kb on + strand, within Shewana3_3110at 3730.548 kb on + strand, within Shewana3_3110at 3730.727 kb on + strand, within Shewana3_3110at 3731.257 kb on + strandat 3731.265 kb on - strandat 3731.282 kb on - strandat 3731.305 kb on + strandat 3731.313 kb on - strandat 3731.313 kb on - strandat 3731.362 kb on + strand, within Shewana3_3111at 3731.533 kb on + strand, within Shewana3_3111at 3731.555 kb on + strand, within Shewana3_3111at 3731.585 kb on - strand, within Shewana3_3111at 3731.629 kb on - strand, within Shewana3_3111at 3731.629 kb on - strand, within Shewana3_3111at 3731.688 kb on + strand, within Shewana3_3111at 3731.772 kb on + strand, within Shewana3_3111at 3731.782 kb on + strand, within Shewana3_3111at 3731.841 kb on + strand, within Shewana3_3111at 3731.841 kb on + strand, within Shewana3_3111

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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3,729,080 - Shewana3_3109 0.39 -1.0
3,729,086 - Shewana3_3109 0.39 +3.4
3,729,212 + Shewana3_3109 0.57 -1.1
3,729,339 + Shewana3_3109 0.74 -0.0
3,729,358 - Shewana3_3109 0.77 +0.4
3,729,358 - Shewana3_3109 0.77 -0.5
3,729,619 + -1.0
3,729,619 + +1.1
3,729,619 + +0.0
3,729,755 - Shewana3_3110 0.13 +0.3
3,729,828 + Shewana3_3110 0.18 +0.0
3,729,867 - Shewana3_3110 0.21 +0.5
3,729,943 - Shewana3_3110 0.27 +0.3
3,730,047 - Shewana3_3110 0.35 +0.3
3,730,185 + Shewana3_3110 0.46 +0.1
3,730,193 - Shewana3_3110 0.47 +0.1
3,730,193 - Shewana3_3110 0.47 +0.1
3,730,203 - Shewana3_3110 0.47 -1.6
3,730,387 - Shewana3_3110 0.62 -0.1
3,730,387 - Shewana3_3110 0.62 -0.4
3,730,387 - Shewana3_3110 0.62 +0.4
3,730,530 + Shewana3_3110 0.73 +0.3
3,730,548 + Shewana3_3110 0.74 +2.8
3,730,727 + Shewana3_3110 0.88 +0.7
3,731,257 + -0.1
3,731,265 - -1.2
3,731,282 - +0.6
3,731,305 + -2.9
3,731,313 - +0.6
3,731,313 - +0.8
3,731,362 + Shewana3_3111 0.11 +0.4
3,731,533 + Shewana3_3111 0.26 +0.6
3,731,555 + Shewana3_3111 0.28 -0.9
3,731,585 - Shewana3_3111 0.30 +0.0
3,731,629 - Shewana3_3111 0.34 +0.2
3,731,629 - Shewana3_3111 0.34 +0.3
3,731,688 + Shewana3_3111 0.39 +0.1
3,731,772 + Shewana3_3111 0.46 +0.3
3,731,782 + Shewana3_3111 0.47 +0.4
3,731,841 + Shewana3_3111 0.52 +0.2
3,731,841 + Shewana3_3111 0.52 -0.9

Or see this region's nucleotide sequence