Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2987

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2986 and Shewana3_2987 are separated by 473 nucleotidesShewana3_2987 and Shewana3_2988 are separated by 348 nucleotides Shewana3_2986: Shewana3_2986 - peptidase M24 (RefSeq), at 3,588,962 to 3,590,776 _2986 Shewana3_2987: Shewana3_2987 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,591,250 to 3,592,818 _2987 Shewana3_2988: Shewana3_2988 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 3,593,167 to 3,594,468 _2988 Position (kb) 3591 3592 3593Strain fitness (log2 ratio) -2 -1 0 1at 3590.282 kb on + strand, within Shewana3_2986at 3590.300 kb on - strand, within Shewana3_2986at 3590.570 kb on + strand, within Shewana3_2986at 3590.570 kb on + strand, within Shewana3_2986at 3590.578 kb on - strand, within Shewana3_2986at 3590.618 kb on - strandat 3590.680 kb on + strandat 3590.688 kb on - strandat 3590.704 kb on + strandat 3590.704 kb on + strandat 3590.766 kb on - strandat 3590.784 kb on - strandat 3590.807 kb on - strandat 3590.844 kb on - strandat 3591.256 kb on - strandat 3591.258 kb on + strandat 3591.263 kb on + strandat 3591.266 kb on - strandat 3591.304 kb on - strandat 3591.322 kb on + strandat 3591.467 kb on - strand, within Shewana3_2987at 3591.613 kb on - strand, within Shewana3_2987at 3591.637 kb on + strand, within Shewana3_2987at 3591.745 kb on + strand, within Shewana3_2987at 3591.774 kb on - strand, within Shewana3_2987at 3591.815 kb on + strand, within Shewana3_2987at 3592.409 kb on + strand, within Shewana3_2987at 3592.578 kb on - strand, within Shewana3_2987at 3592.660 kb on - strand, within Shewana3_2987at 3592.667 kb on + strandat 3592.716 kb on - strandat 3592.803 kb on - strandat 3592.808 kb on + strandat 3593.060 kb on + strandat 3593.068 kb on - strandat 3593.068 kb on - strandat 3593.253 kb on - strandat 3593.394 kb on + strand, within Shewana3_2988at 3593.652 kb on - strand, within Shewana3_2988

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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3,590,282 + Shewana3_2986 0.73 -0.7
3,590,300 - Shewana3_2986 0.74 -1.2
3,590,570 + Shewana3_2986 0.89 +0.2
3,590,570 + Shewana3_2986 0.89 +0.4
3,590,578 - Shewana3_2986 0.89 -1.0
3,590,618 - +0.3
3,590,680 + -1.4
3,590,688 - +0.4
3,590,704 + +0.2
3,590,704 + -0.5
3,590,766 - +0.1
3,590,784 - +0.3
3,590,807 - +0.4
3,590,844 - +0.0
3,591,256 - -0.5
3,591,258 + +0.1
3,591,263 + -0.1
3,591,266 - +0.4
3,591,304 - +0.7
3,591,322 + -1.1
3,591,467 - Shewana3_2987 0.14 +0.4
3,591,613 - Shewana3_2987 0.23 -2.0
3,591,637 + Shewana3_2987 0.25 +0.4
3,591,745 + Shewana3_2987 0.32 +1.3
3,591,774 - Shewana3_2987 0.33 -1.9
3,591,815 + Shewana3_2987 0.36 +0.7
3,592,409 + Shewana3_2987 0.74 +0.0
3,592,578 - Shewana3_2987 0.85 +0.1
3,592,660 - Shewana3_2987 0.90 +0.7
3,592,667 + +0.3
3,592,716 - -0.9
3,592,803 - -0.1
3,592,808 + -1.2
3,593,060 + +0.5
3,593,068 - +1.4
3,593,068 - +0.9
3,593,253 - +1.2
3,593,394 + Shewana3_2988 0.17 +0.7
3,593,652 - Shewana3_2988 0.37 +1.2

Or see this region's nucleotide sequence