Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2985 and Shewana3_2986 are separated by 361 nucleotides Shewana3_2986 and Shewana3_2987 are separated by 473 nucleotides
Shewana3_2985: Shewana3_2985 - ROK family protein (RefSeq), at 3,587,809 to 3,588,600
_2985
Shewana3_2986: Shewana3_2986 - peptidase M24 (RefSeq), at 3,588,962 to 3,590,776
_2986
Shewana3_2987: Shewana3_2987 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,591,250 to 3,592,818
_2987
Position (kb)
3588
3589
3590
3591 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3588.013 kb on - strand, within Shewana3_2985 at 3588.028 kb on + strand, within Shewana3_2985 at 3588.239 kb on - strand, within Shewana3_2985 at 3588.249 kb on - strand, within Shewana3_2985 at 3588.353 kb on - strand, within Shewana3_2985 at 3588.510 kb on - strand, within Shewana3_2985 at 3588.786 kb on - strand at 3588.863 kb on - strand at 3589.031 kb on + strand at 3589.116 kb on - strand at 3589.287 kb on + strand, within Shewana3_2986 at 3589.338 kb on + strand, within Shewana3_2986 at 3589.645 kb on + strand, within Shewana3_2986 at 3589.724 kb on + strand, within Shewana3_2986 at 3589.724 kb on + strand, within Shewana3_2986 at 3589.729 kb on + strand, within Shewana3_2986 at 3589.769 kb on + strand, within Shewana3_2986 at 3589.882 kb on + strand, within Shewana3_2986 at 3589.882 kb on + strand, within Shewana3_2986 at 3589.890 kb on - strand, within Shewana3_2986 at 3589.911 kb on + strand, within Shewana3_2986 at 3590.158 kb on + strand, within Shewana3_2986 at 3590.282 kb on + strand, within Shewana3_2986 at 3590.300 kb on - strand, within Shewana3_2986 at 3590.570 kb on + strand, within Shewana3_2986 at 3590.570 kb on + strand, within Shewana3_2986 at 3590.578 kb on - strand, within Shewana3_2986 at 3590.618 kb on - strand at 3590.680 kb on + strand at 3590.688 kb on - strand at 3590.704 kb on + strand at 3590.704 kb on + strand at 3590.766 kb on - strand at 3590.784 kb on - strand at 3590.807 kb on - strand at 3590.844 kb on - strand at 3591.256 kb on - strand at 3591.258 kb on + strand at 3591.263 kb on + strand at 3591.266 kb on - strand at 3591.304 kb on - strand at 3591.322 kb on + strand at 3591.467 kb on - strand, within Shewana3_2987 at 3591.613 kb on - strand, within Shewana3_2987 at 3591.637 kb on + strand, within Shewana3_2987 at 3591.745 kb on + strand, within Shewana3_2987 at 3591.774 kb on - strand, within Shewana3_2987
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 3,588,013 - Shewana3_2985 0.26 +0.4 3,588,028 + Shewana3_2985 0.28 -1.6 3,588,239 - Shewana3_2985 0.54 +0.6 3,588,249 - Shewana3_2985 0.56 -1.0 3,588,353 - Shewana3_2985 0.69 +0.5 3,588,510 - Shewana3_2985 0.89 +0.5 3,588,786 - +0.5 3,588,863 - -2.3 3,589,031 + -0.9 3,589,116 - -1.0 3,589,287 + Shewana3_2986 0.18 +0.9 3,589,338 + Shewana3_2986 0.21 +1.6 3,589,645 + Shewana3_2986 0.38 -1.1 3,589,724 + Shewana3_2986 0.42 +0.3 3,589,724 + Shewana3_2986 0.42 +1.0 3,589,729 + Shewana3_2986 0.42 -0.2 3,589,769 + Shewana3_2986 0.44 +0.4 3,589,882 + Shewana3_2986 0.51 +0.4 3,589,882 + Shewana3_2986 0.51 -0.7 3,589,890 - Shewana3_2986 0.51 +0.2 3,589,911 + Shewana3_2986 0.52 +2.6 3,590,158 + Shewana3_2986 0.66 +0.2 3,590,282 + Shewana3_2986 0.73 -0.7 3,590,300 - Shewana3_2986 0.74 -1.2 3,590,570 + Shewana3_2986 0.89 +0.2 3,590,570 + Shewana3_2986 0.89 +0.4 3,590,578 - Shewana3_2986 0.89 -1.0 3,590,618 - +0.3 3,590,680 + -1.4 3,590,688 - +0.4 3,590,704 + +0.2 3,590,704 + -0.5 3,590,766 - +0.1 3,590,784 - +0.3 3,590,807 - +0.4 3,590,844 - +0.0 3,591,256 - -0.5 3,591,258 + +0.1 3,591,263 + -0.1 3,591,266 - +0.4 3,591,304 - +0.7 3,591,322 + -1.1 3,591,467 - Shewana3_2987 0.14 +0.4 3,591,613 - Shewana3_2987 0.23 -2.0 3,591,637 + Shewana3_2987 0.25 +0.4 3,591,745 + Shewana3_2987 0.32 +1.3 3,591,774 - Shewana3_2987 0.33 -1.9
Or see this region's nucleotide sequence