Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2925

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2924 and Shewana3_2925 are separated by 145 nucleotidesShewana3_2925 and Shewana3_2926 are separated by 338 nucleotides Shewana3_2924: Shewana3_2924 - major facilitator transporter (RefSeq), at 3,504,516 to 3,506,060 _2924 Shewana3_2925: Shewana3_2925 - hypothetical protein (RefSeq), at 3,506,206 to 3,506,727 _2925 Shewana3_2926: Shewana3_2926 - extracellular solute-binding protein (RefSeq), at 3,507,066 to 3,507,842 _2926 Position (kb) 3506 3507Strain fitness (log2 ratio) -3 -2 -1 0 1at 3505.222 kb on - strand, within Shewana3_2924at 3505.312 kb on - strand, within Shewana3_2924at 3505.360 kb on - strand, within Shewana3_2924at 3505.568 kb on - strand, within Shewana3_2924at 3505.728 kb on + strand, within Shewana3_2924at 3505.743 kb on - strand, within Shewana3_2924at 3505.765 kb on + strand, within Shewana3_2924at 3505.915 kb on + strandat 3506.057 kb on + strandat 3506.097 kb on + strandat 3506.265 kb on - strand, within Shewana3_2925at 3506.287 kb on + strand, within Shewana3_2925at 3506.506 kb on - strand, within Shewana3_2925at 3506.519 kb on + strand, within Shewana3_2925at 3506.527 kb on - strand, within Shewana3_2925at 3506.535 kb on - strand, within Shewana3_2925at 3506.601 kb on - strand, within Shewana3_2925at 3506.767 kb on + strandat 3506.767 kb on + strandat 3506.781 kb on + strandat 3506.857 kb on - strandat 3506.857 kb on - strandat 3507.141 kb on - strandat 3507.189 kb on + strand, within Shewana3_2926at 3507.213 kb on + strand, within Shewana3_2926at 3507.301 kb on - strand, within Shewana3_2926at 3507.432 kb on - strand, within Shewana3_2926at 3507.569 kb on - strand, within Shewana3_2926

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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3,505,222 - Shewana3_2924 0.46 +0.2
3,505,312 - Shewana3_2924 0.52 +0.4
3,505,360 - Shewana3_2924 0.55 -1.0
3,505,568 - Shewana3_2924 0.68 +0.4
3,505,728 + Shewana3_2924 0.78 +0.4
3,505,743 - Shewana3_2924 0.79 -0.9
3,505,765 + Shewana3_2924 0.81 +0.5
3,505,915 + +0.5
3,506,057 + +0.1
3,506,097 + -0.4
3,506,265 - Shewana3_2925 0.11 -0.0
3,506,287 + Shewana3_2925 0.16 +0.6
3,506,506 - Shewana3_2925 0.57 +0.3
3,506,519 + Shewana3_2925 0.60 +1.2
3,506,527 - Shewana3_2925 0.61 +0.7
3,506,535 - Shewana3_2925 0.63 +0.3
3,506,601 - Shewana3_2925 0.76 +0.0
3,506,767 + +0.5
3,506,767 + +0.2
3,506,781 + -0.1
3,506,857 - -0.2
3,506,857 - -1.7
3,507,141 - +1.5
3,507,189 + Shewana3_2926 0.16 +0.6
3,507,213 + Shewana3_2926 0.19 -3.4
3,507,301 - Shewana3_2926 0.30 +0.5
3,507,432 - Shewana3_2926 0.47 +0.8
3,507,569 - Shewana3_2926 0.65 +0.4

Or see this region's nucleotide sequence