Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2905 and Shewana3_2906 are separated by 269 nucleotides Shewana3_2906 and Shewana3_2907 are separated by 10 nucleotides
Shewana3_2905: Shewana3_2905 - FAD linked oxidase domain-containing protein (RefSeq), at 3,476,042 to 3,478,846
_2905
Shewana3_2906: Shewana3_2906 - hypothetical protein (RefSeq), at 3,479,116 to 3,479,892
_2906
Shewana3_2907: Shewana3_2907 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 3,479,903 to 3,481,297
_2907
Position (kb)
3479
3480 Strain fitness (log2 ratio)
-2
-1
0
1 at 3478.163 kb on + strand, within Shewana3_2905 at 3478.199 kb on - strand, within Shewana3_2905 at 3478.260 kb on - strand, within Shewana3_2905 at 3478.437 kb on - strand, within Shewana3_2905 at 3478.504 kb on + strand, within Shewana3_2905 at 3478.593 kb on - strand at 3478.635 kb on - strand at 3478.815 kb on - strand at 3478.862 kb on + strand at 3479.114 kb on - strand at 3479.318 kb on + strand, within Shewana3_2906 at 3479.385 kb on + strand, within Shewana3_2906 at 3479.421 kb on + strand, within Shewana3_2906 at 3479.567 kb on + strand, within Shewana3_2906 at 3479.616 kb on + strand, within Shewana3_2906 at 3479.624 kb on - strand, within Shewana3_2906 at 3479.660 kb on + strand, within Shewana3_2906 at 3479.749 kb on + strand, within Shewana3_2906 at 3479.880 kb on - strand at 3479.882 kb on - strand at 3479.983 kb on - strand at 3480.006 kb on + strand at 3480.111 kb on + strand, within Shewana3_2907 at 3480.116 kb on + strand, within Shewana3_2907 at 3480.181 kb on + strand, within Shewana3_2907 at 3480.250 kb on + strand, within Shewana3_2907 at 3480.258 kb on - strand, within Shewana3_2907 at 3480.690 kb on + strand, within Shewana3_2907 at 3480.690 kb on + strand, within Shewana3_2907 at 3480.693 kb on - strand, within Shewana3_2907 at 3480.873 kb on - strand, within Shewana3_2907 at 3480.883 kb on - strand, within Shewana3_2907
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 3,478,163 + Shewana3_2905 0.76 +0.1 3,478,199 - Shewana3_2905 0.77 -0.2 3,478,260 - Shewana3_2905 0.79 -0.7 3,478,437 - Shewana3_2905 0.85 -0.0 3,478,504 + Shewana3_2905 0.88 +0.0 3,478,593 - -1.8 3,478,635 - -0.6 3,478,815 - -0.1 3,478,862 + -1.1 3,479,114 - -0.8 3,479,318 + Shewana3_2906 0.26 +0.5 3,479,385 + Shewana3_2906 0.35 -0.2 3,479,421 + Shewana3_2906 0.39 -1.1 3,479,567 + Shewana3_2906 0.58 +0.2 3,479,616 + Shewana3_2906 0.64 -1.2 3,479,624 - Shewana3_2906 0.65 -0.1 3,479,660 + Shewana3_2906 0.70 -1.3 3,479,749 + Shewana3_2906 0.81 +0.1 3,479,880 - +0.3 3,479,882 - +0.2 3,479,983 - +0.2 3,480,006 + +0.0 3,480,111 + Shewana3_2907 0.15 -0.3 3,480,116 + Shewana3_2907 0.15 +0.4 3,480,181 + Shewana3_2907 0.20 +0.4 3,480,250 + Shewana3_2907 0.25 -2.0 3,480,258 - Shewana3_2907 0.25 +0.0 3,480,690 + Shewana3_2907 0.56 -0.6 3,480,690 + Shewana3_2907 0.56 +0.4 3,480,693 - Shewana3_2907 0.57 -0.6 3,480,873 - Shewana3_2907 0.70 -1.0 3,480,883 - Shewana3_2907 0.70 -1.3
Or see this region's nucleotide sequence