Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2898

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmotB and Shewana3_2898 are separated by 3 nucleotidesShewana3_2898 and Shewana3_2899 are separated by 314 nucleotidesShewana3_2899 and Shewana3_2900 are separated by 2 nucleotides Shewana3_2897: motB - flagellar motor protein MotB (RefSeq), at 3,466,819 to 3,467,739 motB Shewana3_2898: Shewana3_2898 - flagellar motor protein PomA (RefSeq), at 3,467,743 to 3,468,510 _2898 Shewana3_2899: Shewana3_2899 - exodeoxyribonuclease VII small subunit (RefSeq), at 3,468,825 to 3,469,064 _2899 Shewana3_2900: Shewana3_2900 - farnesyl-diphosphate synthase (RefSeq), at 3,469,067 to 3,469,948 _2900 Position (kb) 3467 3468 3469Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3466.861 kb on - strandat 3466.900 kb on + strandat 3466.931 kb on - strand, within motBat 3467.033 kb on - strand, within motBat 3467.054 kb on + strand, within motBat 3467.149 kb on - strand, within motBat 3467.149 kb on - strand, within motBat 3467.297 kb on + strand, within motBat 3467.546 kb on - strand, within motBat 3467.615 kb on - strand, within motBat 3467.662 kb on + strandat 3467.838 kb on - strand, within Shewana3_2898at 3467.952 kb on - strand, within Shewana3_2898at 3468.037 kb on + strand, within Shewana3_2898at 3468.156 kb on - strand, within Shewana3_2898at 3468.286 kb on + strand, within Shewana3_2898at 3468.455 kb on + strandat 3468.463 kb on - strandat 3468.783 kb on + strandat 3468.786 kb on + strandat 3469.055 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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3,466,861 - +0.6
3,466,900 + +1.3
3,466,931 - motB Shewana3_2897 0.12 +3.3
3,467,033 - motB Shewana3_2897 0.23 -0.1
3,467,054 + motB Shewana3_2897 0.26 +3.0
3,467,149 - motB Shewana3_2897 0.36 +3.2
3,467,149 - motB Shewana3_2897 0.36 +3.0
3,467,297 + motB Shewana3_2897 0.52 +3.4
3,467,546 - motB Shewana3_2897 0.79 +1.5
3,467,615 - motB Shewana3_2897 0.86 +1.3
3,467,662 + +2.8
3,467,838 - Shewana3_2898 0.12 +1.5
3,467,952 - Shewana3_2898 0.27 +3.2
3,468,037 + Shewana3_2898 0.38 +3.0
3,468,156 - Shewana3_2898 0.54 +3.2
3,468,286 + Shewana3_2898 0.71 +2.3
3,468,455 + +5.5
3,468,463 - +2.8
3,468,783 + -1.9
3,468,786 + +0.5
3,469,055 + +1.2

Or see this region's nucleotide sequence