Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2882 and Shewana3_2883 are separated by 140 nucleotides Shewana3_2883 and Shewana3_2884 are separated by 149 nucleotides
Shewana3_2882: Shewana3_2882 - peptidase M61 domain-containing protein (RefSeq), at 3,446,868 to 3,448,679
_2882
Shewana3_2883: Shewana3_2883 - TPR repeat-containing protein (RefSeq), at 3,448,820 to 3,450,982
_2883
Shewana3_2884: Shewana3_2884 - diguanylate cyclase (RefSeq), at 3,451,132 to 3,452,688
_2884
Position (kb)
3448
3449
3450
3451 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3447.860 kb on + strand, within Shewana3_2882 at 3447.949 kb on + strand, within Shewana3_2882 at 3447.972 kb on + strand, within Shewana3_2882 at 3448.038 kb on - strand, within Shewana3_2882 at 3448.077 kb on - strand, within Shewana3_2882 at 3448.145 kb on + strand, within Shewana3_2882 at 3448.342 kb on + strand, within Shewana3_2882 at 3448.413 kb on + strand, within Shewana3_2882 at 3448.443 kb on + strand, within Shewana3_2882 at 3448.558 kb on + strand at 3448.571 kb on - strand at 3448.616 kb on - strand at 3448.810 kb on - strand at 3448.820 kb on - strand at 3449.011 kb on - strand at 3449.014 kb on + strand at 3449.285 kb on - strand, within Shewana3_2883 at 3449.666 kb on - strand, within Shewana3_2883 at 3449.669 kb on - strand, within Shewana3_2883 at 3449.776 kb on - strand, within Shewana3_2883 at 3449.895 kb on - strand, within Shewana3_2883 at 3450.155 kb on - strand, within Shewana3_2883 at 3450.199 kb on - strand, within Shewana3_2883 at 3450.291 kb on - strand, within Shewana3_2883 at 3450.351 kb on + strand, within Shewana3_2883 at 3450.435 kb on - strand, within Shewana3_2883 at 3450.466 kb on + strand, within Shewana3_2883 at 3450.487 kb on + strand, within Shewana3_2883 at 3450.551 kb on - strand, within Shewana3_2883 at 3450.628 kb on - strand, within Shewana3_2883 at 3450.656 kb on + strand, within Shewana3_2883 at 3450.664 kb on - strand, within Shewana3_2883 at 3450.669 kb on + strand, within Shewana3_2883 at 3450.677 kb on - strand, within Shewana3_2883 at 3450.758 kb on + strand, within Shewana3_2883 at 3450.816 kb on - strand at 3451.273 kb on - strand at 3451.434 kb on + strand, within Shewana3_2884 at 3451.484 kb on - strand, within Shewana3_2884 at 3451.719 kb on - strand, within Shewana3_2884 at 3451.726 kb on + strand, within Shewana3_2884 at 3451.731 kb on + strand, within Shewana3_2884 at 3451.928 kb on - strand, within Shewana3_2884
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 3,447,860 + Shewana3_2882 0.55 +0.2 3,447,949 + Shewana3_2882 0.60 -1.8 3,447,972 + Shewana3_2882 0.61 +0.3 3,448,038 - Shewana3_2882 0.65 -0.9 3,448,077 - Shewana3_2882 0.67 -2.9 3,448,145 + Shewana3_2882 0.70 +0.1 3,448,342 + Shewana3_2882 0.81 +0.2 3,448,413 + Shewana3_2882 0.85 -0.7 3,448,443 + Shewana3_2882 0.87 -0.1 3,448,558 + +0.8 3,448,571 - -1.0 3,448,616 - -1.2 3,448,810 - -0.0 3,448,820 - -0.6 3,449,011 - -0.4 3,449,014 + +0.5 3,449,285 - Shewana3_2883 0.21 +0.3 3,449,666 - Shewana3_2883 0.39 +0.8 3,449,669 - Shewana3_2883 0.39 +0.4 3,449,776 - Shewana3_2883 0.44 -0.4 3,449,895 - Shewana3_2883 0.50 +1.9 3,450,155 - Shewana3_2883 0.62 +0.2 3,450,199 - Shewana3_2883 0.64 +0.9 3,450,291 - Shewana3_2883 0.68 +0.4 3,450,351 + Shewana3_2883 0.71 +0.6 3,450,435 - Shewana3_2883 0.75 -1.0 3,450,466 + Shewana3_2883 0.76 -0.7 3,450,487 + Shewana3_2883 0.77 -0.6 3,450,551 - Shewana3_2883 0.80 -0.0 3,450,628 - Shewana3_2883 0.84 +0.7 3,450,656 + Shewana3_2883 0.85 -0.0 3,450,664 - Shewana3_2883 0.85 +0.6 3,450,669 + Shewana3_2883 0.85 -1.2 3,450,677 - Shewana3_2883 0.86 -0.8 3,450,758 + Shewana3_2883 0.90 +0.3 3,450,816 - +0.4 3,451,273 - +1.3 3,451,434 + Shewana3_2884 0.19 +0.0 3,451,484 - Shewana3_2884 0.23 +0.0 3,451,719 - Shewana3_2884 0.38 -0.2 3,451,726 + Shewana3_2884 0.38 +0.5 3,451,731 + Shewana3_2884 0.38 +0.0 3,451,928 - Shewana3_2884 0.51 -1.4
Or see this region's nucleotide sequence