Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2762

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2761 and Shewana3_2762 are separated by 136 nucleotidesShewana3_2762 and Shewana3_2763 are separated by 102 nucleotides Shewana3_2761: Shewana3_2761 - copper-translocating P-type ATPase (RefSeq), at 3,298,139 to 3,300,400 _2761 Shewana3_2762: Shewana3_2762 - MerR family transcriptional regulator (RefSeq), at 3,300,537 to 3,300,926 _2762 Shewana3_2763: Shewana3_2763 - peptidase S9 prolyl oligopeptidase (RefSeq), at 3,301,029 to 3,303,062 _2763 Position (kb) 3300 3301Strain fitness (log2 ratio) -1 0 1at 3299.582 kb on - strand, within Shewana3_2761at 3299.628 kb on + strand, within Shewana3_2761at 3299.645 kb on + strand, within Shewana3_2761at 3299.664 kb on + strand, within Shewana3_2761at 3299.838 kb on - strand, within Shewana3_2761at 3299.887 kb on + strand, within Shewana3_2761at 3299.887 kb on + strand, within Shewana3_2761at 3299.900 kb on - strand, within Shewana3_2761at 3299.900 kb on - strand, within Shewana3_2761at 3299.900 kb on - strand, within Shewana3_2761at 3299.997 kb on - strand, within Shewana3_2761at 3300.509 kb on + strandat 3300.567 kb on + strandat 3300.567 kb on + strandat 3300.575 kb on - strandat 3300.619 kb on - strand, within Shewana3_2762at 3301.138 kb on + strandat 3301.146 kb on - strandat 3301.258 kb on - strand, within Shewana3_2763at 3301.530 kb on + strand, within Shewana3_2763at 3301.542 kb on + strand, within Shewana3_2763at 3301.542 kb on + strand, within Shewana3_2763at 3301.632 kb on + strand, within Shewana3_2763at 3301.721 kb on - strand, within Shewana3_2763at 3301.748 kb on + strand, within Shewana3_2763at 3301.888 kb on + strand, within Shewana3_2763at 3301.913 kb on - strand, within Shewana3_2763

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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3,299,582 - Shewana3_2761 0.64 -1.3
3,299,628 + Shewana3_2761 0.66 +0.4
3,299,645 + Shewana3_2761 0.67 -1.4
3,299,664 + Shewana3_2761 0.67 -0.1
3,299,838 - Shewana3_2761 0.75 +0.4
3,299,887 + Shewana3_2761 0.77 +0.3
3,299,887 + Shewana3_2761 0.77 -0.9
3,299,900 - Shewana3_2761 0.78 -1.0
3,299,900 - Shewana3_2761 0.78 -0.0
3,299,900 - Shewana3_2761 0.78 +0.4
3,299,997 - Shewana3_2761 0.82 +0.5
3,300,509 + +0.2
3,300,567 + +0.2
3,300,567 + -0.2
3,300,575 - -1.3
3,300,619 - Shewana3_2762 0.21 +0.5
3,301,138 + +0.1
3,301,146 - -1.3
3,301,258 - Shewana3_2763 0.11 +0.8
3,301,530 + Shewana3_2763 0.25 +0.5
3,301,542 + Shewana3_2763 0.25 -0.0
3,301,542 + Shewana3_2763 0.25 -0.4
3,301,632 + Shewana3_2763 0.30 +0.4
3,301,721 - Shewana3_2763 0.34 +0.1
3,301,748 + Shewana3_2763 0.35 +0.2
3,301,888 + Shewana3_2763 0.42 -0.6
3,301,913 - Shewana3_2763 0.43 -0.0

Or see this region's nucleotide sequence