Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2733 and Shewana3_2734 are separated by 59 nucleotides Shewana3_2734 and Shewana3_2735 are separated by 199 nucleotides Shewana3_2735 and Shewana3_2736 are separated by 60 nucleotides
Shewana3_2733: Shewana3_2733 - phosphate ABC transporter, inner membrane subunit PstA (RefSeq), at 3,262,841 to 3,264,499
_2733
Shewana3_2734: Shewana3_2734 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,264,559 to 3,266,817
_2734
Shewana3_2735: Shewana3_2735 - ACT domain-containing protein (RefSeq), at 3,267,017 to 3,267,517
_2735
Shewana3_2736: Shewana3_2736 - hypothetical protein (RefSeq), at 3,267,578 to 3,268,465
_2736
Position (kb)
3264
3265
3266
3267 Strain fitness (log2 ratio)
-1
0
1
2 at 3263.689 kb on - strand, within Shewana3_2733 at 3264.201 kb on - strand, within Shewana3_2733 at 3264.576 kb on - strand at 3264.668 kb on - strand at 3264.743 kb on - strand at 3264.772 kb on - strand at 3265.256 kb on - strand at 3265.573 kb on - strand, within Shewana3_2734 at 3266.797 kb on - strand at 3267.114 kb on + strand, within Shewana3_2735 at 3267.114 kb on + strand, within Shewana3_2735 at 3267.122 kb on - strand, within Shewana3_2735 at 3267.122 kb on - strand, within Shewana3_2735 at 3267.122 kb on - strand, within Shewana3_2735 at 3267.219 kb on + strand, within Shewana3_2735 at 3267.290 kb on - strand, within Shewana3_2735 at 3267.381 kb on - strand, within Shewana3_2735 at 3267.389 kb on - strand, within Shewana3_2735 at 3267.416 kb on + strand, within Shewana3_2735 at 3267.446 kb on - strand, within Shewana3_2735 at 3267.461 kb on + strand, within Shewana3_2735 at 3267.679 kb on + strand, within Shewana3_2736 at 3267.679 kb on + strand, within Shewana3_2736 at 3267.679 kb on + strand, within Shewana3_2736 at 3267.687 kb on - strand, within Shewana3_2736 at 3267.687 kb on - strand, within Shewana3_2736 at 3267.795 kb on + strand, within Shewana3_2736 at 3267.803 kb on - strand, within Shewana3_2736
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 3,263,689 - Shewana3_2733 0.51 -0.3 3,264,201 - Shewana3_2733 0.82 -0.3 3,264,576 - +0.1 3,264,668 - -0.6 3,264,743 - +0.6 3,264,772 - -1.7 3,265,256 - +1.8 3,265,573 - Shewana3_2734 0.45 -0.2 3,266,797 - +2.4 3,267,114 + Shewana3_2735 0.19 +0.0 3,267,114 + Shewana3_2735 0.19 -0.7 3,267,122 - Shewana3_2735 0.21 -1.0 3,267,122 - Shewana3_2735 0.21 +1.7 3,267,122 - Shewana3_2735 0.21 +0.1 3,267,219 + Shewana3_2735 0.40 -0.9 3,267,290 - Shewana3_2735 0.54 +0.1 3,267,381 - Shewana3_2735 0.73 +0.6 3,267,389 - Shewana3_2735 0.74 -1.3 3,267,416 + Shewana3_2735 0.80 -1.5 3,267,446 - Shewana3_2735 0.86 +0.2 3,267,461 + Shewana3_2735 0.89 -1.1 3,267,679 + Shewana3_2736 0.11 +0.4 3,267,679 + Shewana3_2736 0.11 +0.4 3,267,679 + Shewana3_2736 0.11 +0.4 3,267,687 - Shewana3_2736 0.12 +0.7 3,267,687 - Shewana3_2736 0.12 +0.1 3,267,795 + Shewana3_2736 0.24 -0.4 3,267,803 - Shewana3_2736 0.25 +0.1
Or see this region's nucleotide sequence