Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2728 and Shewana3_2729 are separated by 16 nucleotides Shewana3_2729 and Shewana3_2730 are separated by 79 nucleotides Shewana3_2730 and Shewana3_2731 are separated by 410 nucleotides
Shewana3_2728: Shewana3_2728 - hypothetical protein (RefSeq), at 3,259,143 to 3,259,592
_2728
Shewana3_2729: Shewana3_2729 - hypothetical protein (RefSeq), at 3,259,609 to 3,260,208
_2729
Shewana3_2730: Shewana3_2730 - hypothetical protein (RefSeq), at 3,260,288 to 3,260,740
_2730
Shewana3_2731: Shewana3_2731 - transcriptional regulator PhoU (RefSeq), at 3,261,151 to 3,261,861
_2731
Position (kb)
3260
3261 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3259.391 kb on + strand, within Shewana3_2728 at 3259.405 kb on + strand, within Shewana3_2728 at 3259.412 kb on - strand, within Shewana3_2728 at 3259.428 kb on - strand, within Shewana3_2728 at 3259.448 kb on + strand, within Shewana3_2728 at 3259.456 kb on - strand, within Shewana3_2728 at 3259.460 kb on + strand, within Shewana3_2728 at 3259.460 kb on + strand, within Shewana3_2728 at 3259.468 kb on - strand, within Shewana3_2728 at 3259.579 kb on + strand at 3259.579 kb on + strand at 3259.619 kb on - strand at 3259.644 kb on + strand at 3259.835 kb on - strand, within Shewana3_2729 at 3259.925 kb on + strand, within Shewana3_2729 at 3259.971 kb on - strand, within Shewana3_2729 at 3260.026 kb on - strand, within Shewana3_2729 at 3260.148 kb on + strand, within Shewana3_2729 at 3260.247 kb on + strand at 3260.255 kb on - strand at 3260.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 3,259,391 + Shewana3_2728 0.55 +1.0 3,259,405 + Shewana3_2728 0.58 -0.6 3,259,412 - Shewana3_2728 0.60 -2.9 3,259,428 - Shewana3_2728 0.63 -0.1 3,259,448 + Shewana3_2728 0.68 -0.6 3,259,456 - Shewana3_2728 0.70 -0.2 3,259,460 + Shewana3_2728 0.70 +0.6 3,259,460 + Shewana3_2728 0.70 -1.4 3,259,468 - Shewana3_2728 0.72 -1.2 3,259,579 + +0.6 3,259,579 + +0.4 3,259,619 - -1.1 3,259,644 + -0.2 3,259,835 - Shewana3_2729 0.38 -1.1 3,259,925 + Shewana3_2729 0.53 -1.4 3,259,971 - Shewana3_2729 0.60 -1.1 3,260,026 - Shewana3_2729 0.69 -1.5 3,260,148 + Shewana3_2729 0.90 -0.4 3,260,247 + -1.0 3,260,255 - +0.3 3,260,905 - -0.9
Or see this region's nucleotide sequence