Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2549

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2548 and asnB are separated by 464 nucleotidesasnB and Shewana3_2550 are separated by 149 nucleotides Shewana3_2548: Shewana3_2548 - peptidase M28 (RefSeq), at 3,045,472 to 3,047,145 _2548 Shewana3_2549: asnB - asparagine synthetase B (RefSeq), at 3,047,610 to 3,049,274 asnB Shewana3_2550: Shewana3_2550 - patatin (RefSeq), at 3,049,424 to 3,050,431 _2550 Position (kb) 3047 3048 3049 3050Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 3046.999 kb on - strandat 3048.293 kb on + strand, within asnBat 3048.487 kb on - strand, within asnBat 3049.015 kb on + strand, within asnBat 3049.210 kb on + strandat 3049.461 kb on + strandat 3049.521 kb on - strandat 3049.637 kb on + strand, within Shewana3_2550at 3049.677 kb on - strand, within Shewana3_2550at 3049.980 kb on - strand, within Shewana3_2550

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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3,046,999 - +0.5
3,048,293 + asnB Shewana3_2549 0.41 -7.0
3,048,487 - asnB Shewana3_2549 0.53 -6.2
3,049,015 + asnB Shewana3_2549 0.84 -4.5
3,049,210 + -3.8
3,049,461 + -1.2
3,049,521 - +0.3
3,049,637 + Shewana3_2550 0.21 +0.3
3,049,677 - Shewana3_2550 0.25 +0.3
3,049,980 - Shewana3_2550 0.55 +0.2

Or see this region's nucleotide sequence