Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2386 and Shewana3_2387 are separated by 199 nucleotides Shewana3_2387 and Shewana3_2388 are separated by 21 nucleotides Shewana3_2388 and Shewana3_2389 are separated by 130 nucleotides
Shewana3_2386: Shewana3_2386 - long-chain-fatty-acid--CoA ligase (RefSeq), at 2,864,912 to 2,866,585
_2386
Shewana3_2387: Shewana3_2387 - alpha/beta hydrolase fold (RefSeq), at 2,866,785 to 2,867,651
_2387
Shewana3_2388: Shewana3_2388 - hypothetical protein (RefSeq), at 2,867,673 to 2,868,485
_2388
Shewana3_2389: Shewana3_2389 - hypothetical protein (RefSeq), at 2,868,616 to 2,869,323
_2389
Position (kb)
2866
2867
2868 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2865.875 kb on - strand, within Shewana3_2386 at 2866.198 kb on - strand, within Shewana3_2386 at 2866.268 kb on - strand, within Shewana3_2386 at 2866.849 kb on - strand at 2866.865 kb on + strand at 2866.873 kb on - strand, within Shewana3_2387 at 2867.309 kb on - strand, within Shewana3_2387 at 2867.604 kb on + strand at 2867.617 kb on - strand at 2867.751 kb on + strand at 2867.833 kb on - strand, within Shewana3_2388 at 2868.222 kb on + strand, within Shewana3_2388 at 2868.400 kb on + strand, within Shewana3_2388 at 2868.426 kb on + strand at 2868.434 kb on - strand at 2868.434 kb on - strand at 2868.434 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 2,865,875 - Shewana3_2386 0.58 -0.3 2,866,198 - Shewana3_2386 0.77 +0.1 2,866,268 - Shewana3_2386 0.81 +0.3 2,866,849 - -0.2 2,866,865 + +0.1 2,866,873 - Shewana3_2387 0.10 -0.1 2,867,309 - Shewana3_2387 0.60 -0.1 2,867,604 + +2.8 2,867,617 - +0.0 2,867,751 + +0.3 2,867,833 - Shewana3_2388 0.20 -0.3 2,868,222 + Shewana3_2388 0.68 -0.8 2,868,400 + Shewana3_2388 0.89 -1.4 2,868,426 + -3.0 2,868,434 - -0.9 2,868,434 - +0.9 2,868,434 - -1.0
Or see this region's nucleotide sequence