Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2339

Experiment: L-Arabinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2338 and Shewana3_2339 are separated by 129 nucleotidesShewana3_2339 and Shewana3_2340 are separated by 70 nucleotidesShewana3_2340 and Shewana3_2341 are separated by 11 nucleotides Shewana3_2338: Shewana3_2338 - permease (RefSeq), at 2,811,782 to 2,812,858 _2338 Shewana3_2339: Shewana3_2339 - glutathione synthase (RefSeq), at 2,812,988 to 2,814,445 _2339 Shewana3_2340: Shewana3_2340 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 2,814,516 to 2,815,220 _2340 Shewana3_2341: Shewana3_2341 - molybdopterin oxidoreductase (RefSeq), at 2,815,232 to 2,817,796 _2341 Position (kb) 2812 2813 2814 2815Strain fitness (log2 ratio) -3 -2 -1 0 1at 2812.157 kb on + strand, within Shewana3_2338at 2812.228 kb on + strand, within Shewana3_2338at 2812.639 kb on - strand, within Shewana3_2338at 2812.835 kb on + strandat 2812.910 kb on - strandat 2812.922 kb on + strandat 2813.429 kb on - strand, within Shewana3_2339at 2813.469 kb on + strand, within Shewana3_2339at 2813.738 kb on - strand, within Shewana3_2339at 2813.945 kb on + strand, within Shewana3_2339at 2813.964 kb on - strand, within Shewana3_2339at 2813.966 kb on - strand, within Shewana3_2339at 2814.061 kb on + strand, within Shewana3_2339at 2814.071 kb on - strand, within Shewana3_2339at 2814.192 kb on + strand, within Shewana3_2339at 2814.213 kb on - strand, within Shewana3_2339at 2814.598 kb on - strand, within Shewana3_2340at 2814.674 kb on - strand, within Shewana3_2340at 2814.791 kb on + strand, within Shewana3_2340at 2814.868 kb on - strand, within Shewana3_2340at 2814.868 kb on - strand, within Shewana3_2340at 2814.868 kb on - strand, within Shewana3_2340at 2814.868 kb on - strand, within Shewana3_2340at 2815.061 kb on + strand, within Shewana3_2340at 2815.063 kb on - strand, within Shewana3_2340at 2815.069 kb on - strand, within Shewana3_2340at 2815.101 kb on + strand, within Shewana3_2340at 2815.238 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
remove
2,812,157 + Shewana3_2338 0.35 +0.6
2,812,228 + Shewana3_2338 0.41 -1.2
2,812,639 - Shewana3_2338 0.80 -1.5
2,812,835 + -0.9
2,812,910 - +0.3
2,812,922 + +0.3
2,813,429 - Shewana3_2339 0.30 +0.7
2,813,469 + Shewana3_2339 0.33 +1.3
2,813,738 - Shewana3_2339 0.51 -0.5
2,813,945 + Shewana3_2339 0.66 +0.2
2,813,964 - Shewana3_2339 0.67 +0.3
2,813,966 - Shewana3_2339 0.67 -0.2
2,814,061 + Shewana3_2339 0.74 +0.0
2,814,071 - Shewana3_2339 0.74 -0.2
2,814,192 + Shewana3_2339 0.83 +0.5
2,814,213 - Shewana3_2339 0.84 +0.3
2,814,598 - Shewana3_2340 0.12 +0.2
2,814,674 - Shewana3_2340 0.22 +0.6
2,814,791 + Shewana3_2340 0.39 -0.3
2,814,868 - Shewana3_2340 0.50 +0.6
2,814,868 - Shewana3_2340 0.50 +0.4
2,814,868 - Shewana3_2340 0.50 +0.3
2,814,868 - Shewana3_2340 0.50 -0.6
2,815,061 + Shewana3_2340 0.77 +0.3
2,815,063 - Shewana3_2340 0.78 -0.2
2,815,069 - Shewana3_2340 0.78 -3.0
2,815,101 + Shewana3_2340 0.83 +0.6
2,815,238 - +0.6

Or see this region's nucleotide sequence