Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2132

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2131 and Shewana3_2132 are separated by 162 nucleotidesShewana3_2132 and Shewana3_2133 are separated by 277 nucleotidesShewana3_2133 and Shewana3_2134 are separated by 118 nucleotides Shewana3_2131: Shewana3_2131 - dehydrogenase, E1 component (RefSeq), at 2,556,482 to 2,557,660 _2131 Shewana3_2132: Shewana3_2132 - succinylglutamate desuccinylase (RefSeq), at 2,557,823 to 2,558,857 _2132 Shewana3_2133: Shewana3_2133 - peptide methionine sulfoxide reductase (RefSeq), at 2,559,135 to 2,559,614 _2133 Shewana3_2134: Shewana3_2134 - phosphoglucomutase (RefSeq), at 2,559,733 to 2,561,385 _2134 Position (kb) 2557 2558 2559Strain fitness (log2 ratio) -2 -1 0 1at 2556.918 kb on - strand, within Shewana3_2131at 2557.072 kb on - strand, within Shewana3_2131at 2557.134 kb on - strand, within Shewana3_2131at 2557.157 kb on + strand, within Shewana3_2131at 2557.317 kb on + strand, within Shewana3_2131at 2557.325 kb on - strand, within Shewana3_2131at 2557.511 kb on + strand, within Shewana3_2131at 2557.646 kb on - strandat 2557.772 kb on + strandat 2557.831 kb on + strandat 2558.090 kb on + strand, within Shewana3_2132at 2558.169 kb on + strand, within Shewana3_2132at 2558.177 kb on - strand, within Shewana3_2132at 2558.213 kb on - strand, within Shewana3_2132at 2558.318 kb on - strand, within Shewana3_2132at 2558.472 kb on + strand, within Shewana3_2132at 2558.534 kb on + strand, within Shewana3_2132at 2558.694 kb on + strand, within Shewana3_2132at 2558.803 kb on - strandat 2559.042 kb on + strandat 2559.210 kb on + strand, within Shewana3_2133at 2559.506 kb on - strand, within Shewana3_2133at 2559.561 kb on + strand, within Shewana3_2133

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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2,556,918 - Shewana3_2131 0.37 +1.4
2,557,072 - Shewana3_2131 0.50 +1.4
2,557,134 - Shewana3_2131 0.55 +0.9
2,557,157 + Shewana3_2131 0.57 +0.4
2,557,317 + Shewana3_2131 0.71 +0.8
2,557,325 - Shewana3_2131 0.72 +1.5
2,557,511 + Shewana3_2131 0.87 +1.4
2,557,646 - -0.0
2,557,772 + +1.6
2,557,831 + +0.6
2,558,090 + Shewana3_2132 0.26 -1.7
2,558,169 + Shewana3_2132 0.33 -1.6
2,558,177 - Shewana3_2132 0.34 -1.0
2,558,213 - Shewana3_2132 0.38 -2.3
2,558,318 - Shewana3_2132 0.48 -0.8
2,558,472 + Shewana3_2132 0.63 -2.3
2,558,534 + Shewana3_2132 0.69 -0.1
2,558,694 + Shewana3_2132 0.84 -1.4
2,558,803 - -1.2
2,559,042 + +0.3
2,559,210 + Shewana3_2133 0.16 -0.9
2,559,506 - Shewana3_2133 0.77 -2.1
2,559,561 + Shewana3_2133 0.89 -0.1

Or see this region's nucleotide sequence