Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2082 and Shewana3_2083 overlap by 1 nucleotides Shewana3_2083 and Shewana3_2084 are separated by 179 nucleotides
Shewana3_2082: Shewana3_2082 - arabinan endo-1,5-alpha-L-arabinosidase (RefSeq), at 2,493,427 to 2,494,497
_2082
Shewana3_2083: Shewana3_2083 - glycoside hydrolase family protein (RefSeq), at 2,494,497 to 2,496,401
_2083
Shewana3_2084: Shewana3_2084 - permease (RefSeq), at 2,496,581 to 2,497,336
_2084
Position (kb)
2494
2495
2496
2497 Strain fitness (log2 ratio)
-2
-1
0
1 at 2493.767 kb on - strand, within Shewana3_2082 at 2493.973 kb on + strand, within Shewana3_2082 at 2493.974 kb on + strand, within Shewana3_2082 at 2494.192 kb on + strand, within Shewana3_2082 at 2494.265 kb on - strand, within Shewana3_2082 at 2494.432 kb on - strand at 2494.436 kb on + strand at 2494.436 kb on + strand at 2494.436 kb on + strand at 2494.451 kb on + strand at 2494.577 kb on + strand at 2494.585 kb on - strand at 2494.585 kb on - strand at 2495.041 kb on - strand, within Shewana3_2083 at 2495.099 kb on + strand, within Shewana3_2083 at 2495.119 kb on + strand, within Shewana3_2083 at 2495.126 kb on + strand, within Shewana3_2083 at 2495.357 kb on - strand, within Shewana3_2083 at 2495.643 kb on + strand, within Shewana3_2083 at 2495.643 kb on + strand, within Shewana3_2083 at 2495.643 kb on + strand, within Shewana3_2083 at 2495.643 kb on + strand, within Shewana3_2083 at 2495.651 kb on - strand, within Shewana3_2083 at 2495.671 kb on - strand, within Shewana3_2083 at 2495.782 kb on - strand, within Shewana3_2083 at 2495.784 kb on + strand, within Shewana3_2083 at 2495.786 kb on + strand, within Shewana3_2083 at 2495.822 kb on + strand, within Shewana3_2083 at 2495.980 kb on - strand, within Shewana3_2083 at 2496.044 kb on + strand, within Shewana3_2083 at 2496.113 kb on + strand, within Shewana3_2083 at 2496.161 kb on + strand, within Shewana3_2083 at 2496.413 kb on + strand at 2496.416 kb on - strand at 2496.513 kb on + strand at 2496.685 kb on + strand, within Shewana3_2084 at 2496.704 kb on - strand, within Shewana3_2084 at 2496.725 kb on + strand, within Shewana3_2084 at 2496.766 kb on - strand, within Shewana3_2084 at 2497.067 kb on - strand, within Shewana3_2084 at 2497.141 kb on - strand, within Shewana3_2084 at 2497.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 2,493,767 - Shewana3_2082 0.32 +1.4 2,493,973 + Shewana3_2082 0.51 +0.5 2,493,974 + Shewana3_2082 0.51 +0.8 2,494,192 + Shewana3_2082 0.71 +0.8 2,494,265 - Shewana3_2082 0.78 +1.6 2,494,432 - -1.4 2,494,436 + +0.2 2,494,436 + -2.0 2,494,436 + +0.1 2,494,451 + +0.4 2,494,577 + -1.1 2,494,585 - +0.7 2,494,585 - +0.6 2,495,041 - Shewana3_2083 0.29 +0.5 2,495,099 + Shewana3_2083 0.32 -1.2 2,495,119 + Shewana3_2083 0.33 -1.5 2,495,126 + Shewana3_2083 0.33 +0.2 2,495,357 - Shewana3_2083 0.45 +1.0 2,495,643 + Shewana3_2083 0.60 -0.6 2,495,643 + Shewana3_2083 0.60 -0.0 2,495,643 + Shewana3_2083 0.60 +0.3 2,495,643 + Shewana3_2083 0.60 +0.8 2,495,651 - Shewana3_2083 0.61 +0.1 2,495,671 - Shewana3_2083 0.62 -0.6 2,495,782 - Shewana3_2083 0.67 +0.6 2,495,784 + Shewana3_2083 0.68 -0.5 2,495,786 + Shewana3_2083 0.68 -1.1 2,495,822 + Shewana3_2083 0.70 -1.0 2,495,980 - Shewana3_2083 0.78 -0.9 2,496,044 + Shewana3_2083 0.81 +0.5 2,496,113 + Shewana3_2083 0.85 +0.4 2,496,161 + Shewana3_2083 0.87 +0.5 2,496,413 + -0.9 2,496,416 - -1.2 2,496,513 + -0.6 2,496,685 + Shewana3_2084 0.14 -1.0 2,496,704 - Shewana3_2084 0.16 +0.3 2,496,725 + Shewana3_2084 0.19 -1.3 2,496,766 - Shewana3_2084 0.24 +0.3 2,497,067 - Shewana3_2084 0.64 -0.5 2,497,141 - Shewana3_2084 0.74 +0.1 2,497,362 - +0.4
Or see this region's nucleotide sequence