Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2081

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2080 and Shewana3_2081 are separated by 106 nucleotidesShewana3_2081 and Shewana3_2082 are separated by 208 nucleotides Shewana3_2080: Shewana3_2080 - acetyl-CoA carboxylase, biotin carboxylase (RefSeq), at 2,489,279 to 2,491,666 _2080 Shewana3_2081: Shewana3_2081 - sugar (glycoside-Pentoside-hexuronide) transporter (RefSeq), at 2,491,773 to 2,493,218 _2081 Shewana3_2082: Shewana3_2082 - arabinan endo-1,5-alpha-L-arabinosidase (RefSeq), at 2,493,427 to 2,494,497 _2082 Position (kb) 2491 2492 2493 2494Strain fitness (log2 ratio) -2 -1 0 1at 2490.967 kb on + strand, within Shewana3_2080at 2490.977 kb on + strand, within Shewana3_2080at 2490.982 kb on - strand, within Shewana3_2080at 2490.992 kb on + strand, within Shewana3_2080at 2491.017 kb on + strand, within Shewana3_2080at 2491.031 kb on - strand, within Shewana3_2080at 2491.375 kb on - strand, within Shewana3_2080at 2491.667 kb on - strandat 2491.806 kb on - strandat 2492.007 kb on + strand, within Shewana3_2081at 2492.060 kb on + strand, within Shewana3_2081at 2492.263 kb on - strand, within Shewana3_2081at 2492.476 kb on - strand, within Shewana3_2081at 2492.572 kb on + strand, within Shewana3_2081at 2492.929 kb on + strand, within Shewana3_2081at 2493.767 kb on - strand, within Shewana3_2082at 2493.973 kb on + strand, within Shewana3_2082at 2493.974 kb on + strand, within Shewana3_2082at 2494.192 kb on + strand, within Shewana3_2082

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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2,490,967 + Shewana3_2080 0.71 +1.7
2,490,977 + Shewana3_2080 0.71 -1.5
2,490,982 - Shewana3_2080 0.71 -0.1
2,490,992 + Shewana3_2080 0.72 +0.2
2,491,017 + Shewana3_2080 0.73 -0.6
2,491,031 - Shewana3_2080 0.73 +0.8
2,491,375 - Shewana3_2080 0.88 -0.8
2,491,667 - +0.1
2,491,806 - +0.4
2,492,007 + Shewana3_2081 0.16 +0.2
2,492,060 + Shewana3_2081 0.20 -1.7
2,492,263 - Shewana3_2081 0.34 -1.9
2,492,476 - Shewana3_2081 0.49 +0.1
2,492,572 + Shewana3_2081 0.55 -0.9
2,492,929 + Shewana3_2081 0.80 -0.8
2,493,767 - Shewana3_2082 0.32 +1.4
2,493,973 + Shewana3_2082 0.51 +0.5
2,493,974 + Shewana3_2082 0.51 +0.8
2,494,192 + Shewana3_2082 0.71 +0.8

Or see this region's nucleotide sequence